Hello everyone, I have a the list of transcripts with ensemble ID and I want to add the info of chromosome number and the position of genes expressing those transcripts on 2 new columns. Could you please let me know if there is any R codes for getting these info? Thanks very much for your help.
•
written
by
Fatemeh •
1 answer
biomartR https://bioconductor.org/packages/release/bioc/vignettes/biomaRt/inst/doc/accessing_ensembl.html
Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. If an answer was not really helpful or did not work, provide detailed feedback so others know not to use that answer.
Log in to answer this question.
-
Use R to Produce CpG Information
written by Dana •
-
About hg19 reference genome
written by luckysardar171 •
-
Filtering VCF variants based on txt file with variants CHROM, POS and ID
written by avelarbio46 •
-
How to combine a data frame with another data frame containing comma-separated values?
written by sasa •
-
Find the most frequently appeared genes in a list of pathways and genes
written by Kim •
-
How to get the position of a transcript on chromosome with ncbi refseq_ncrna id?
written by hanchuanzhiyu •
-
Genomic Coordinate Annotation
written by ari_sh70 •
-
variable regions within exons of a gene
written by genya35 •
-
Identification of CpG islands
written by jazarza12 •
-
extracting protein coding genes from NCBI seq_gene.md file
written by avari
