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Obtaining enriched motif result for each peak using ArchR

I'm analyzing scATAC-seq data using ArchR by following their official manual. in the section "12.1 Motif Enrichment in Differential Peaks", I obtained good results comparing the motif enrichment of differential peaks between two samples for a same cluster of cells. Now, I want to know which peaks were assigned for enrichment of the significant TFs in my results. Is it possible to do that?

I looked into the results returned by peakAnnoEnrichment, but it only contained TFs, p-values and the number of background peaks, etc.

motif archr r enrichment

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