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Error while doing trimmomatic

Dear all,

I am trying to do trimmomatic of the files: CRR503927_f1.fastq and CRR503927_r2.fastq in jupyter-lab. I am getting the error as shown in the attached image.

enter image description here

Kindly help

Thanks and regards

trimmomatic
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updated by Ram Ram • written by dr.deepakkukkar • dr.deepakkukkar

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written by Pierre Lindenbaum Pierre Lindenbaum

1 answer

CRR503927_f1.fastq (No such file or directory)

the message is quite clear: there is a problem with the path to the fastq.

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written by Pierre Lindenbaum Pierre Lindenbaum

Looking at the other file names in the command a .gz seems to be missing at the end of file name above (assuming the file is in the right location and is compressed). It will also be needed for f2 file.

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written by GenoMax GenoMax

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