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Remove bacterial and protoza from Kraken2 EuPathDB

Hello everyone!

I'm working with EuPathDB for pathogenic eukaryotes. However, I don't want to include Bacterial or Protozoan data; I only want to work with Fungi data. How can I remove them from my database? Does anyone have any ideas? I've searched around but haven't had any success.

database kraken2 eupathdb
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written by Christopher • Christopher

1 answer

Here are the database for different organisms. This should work you-

https://ccb.jhu.edu/data/eupathDB/

• 0 views • link
written by bk11 • bk11

Yes, that will work perfectly! Thank you so much.

However, I also want to know how to remove a specific species from my database since I'm working on a custom database. Any ideas?

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written by Christopher • Christopher

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