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how to remove pig sequences from metagenomics data
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17 months ago
g.feng • 0

hello, I am working on metagenomics data from pig faecal samples. I want to remove pig sequences from the samples using bowtie2 before running humann2. However, I could not find a pig genome database, like the hg19 for human. Do anyone have any idea how can I remove the pig sequences? Thank you.

next-gen • 231 views
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Go to the UCSC genome browser page and search for susScr11 or pig

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I could not find a pig genome database

seriously? here's a second one just three keystrokes away from the NCBI landing page

Sus scrofa at the NCBI leads you to 16 assemblies...

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on google pig genome download + ncbi + hit enter HARD

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