how to remove pig sequences from metagenomics data
hello, I am working on metagenomics data from pig faecal samples. I want to remove pig sequences from the samples using bowtie2 before running humann2. However, I could not find a pig genome database, like the hg19 for human. Do anyone have any idea how can I remove the pig sequences? Thank you.
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Like Pig Reference Genome?
seriously? here's a second one just three keystrokes away from the NCBI landing page
Sus scrofa at the NCBI leads you to 16 assemblies...
Go to the UCSC genome browser page and search for susScr11 or pig
on google
pig genome download + ncbi+hit enterHARD