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Tool: VCF2PopTree: build a phylogenetic tree from a VCF file

A phylogenetic tree can be constructed directly from a VCF file.

The simple software VCF2PopTree reads a VCF file and builds a tree in few minutes.

It also produces pairwise distance matrix from a VCF file, which can then be used as an input file for the popular software such as MEGA.

Software: https://github.com/sansubs/vcf2pop

Paper: VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs. PeerJ, Vol.7, e8213; 2019

vcf2phylogenetictree
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updated by hewm2008 • hewm2008 • written by sankar2004 • sankar2004

Thanks ! This is exactly what i was looking for !

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written by hugo.avila hugo.avila

1 answer

https://github.com/hewm2008/VCF2Dis VCF2Dis is more faster with low mem

vcf 2 p-dis.mat and p-dis.nwk : only one step1

VCF2Dis have been cited in more than 150 times by searching against google scholar

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written by hewm2008 • hewm2008

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