How to get the list of species in biomart plant?
Hi
How can I find the list of plant species available in biomart plant?
I have this code but for different species I don't know how to find other plant.
library(biomaRt)
ensembl_plants <- useEnsemblGenomes(biomart = "plants_mart")
searchDatasets(ensembl_plants, pattern = "aestivum")
1 answer
Hi Raheleh, you can list available Ensembl Plants datasets as follows:
listDatasets(useMart(biomart="plants_mart", host="https://plants.ensembl.org"))
I hope this helps!
Louisse (Ensembl Helpdesk)
• 0 views
•
link
updated
by
Ram
•
written
by
Louisse_Ensembl •
•
written
by
Louisse_Ensembl •
Log in to answer this question.
More posts like this
-
How to assign gene names to ensembl IDs if species not in Biomart
written by bioinfo •
-
where to find mouse genome GRCm38/mm10 for biomart R
written by Alewa
-
biomaRt does not convert entrez gene id to ensembl gene id
written by Bane •
-
Mapping genes on chromosomes
written by 1234anjalianjali1234 •
-
error while using plant ensembl biomart
written by Medhat
-
extracting submatrix from microarray
written by mannoulag1
-
Using Plant GO Slim in topGO
written by Sreeraj Thamban
-
Ensembl Biomart Plant database
written by ####
-
Retrieving Information From Ensembl Without Knowing The Speices
written by sarahmanderni
-
How To Get A Unique Line Of Annotation For Each Specific Genomic Position Of A Plant Genome
written by Jianfengmao •
