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0 votes
2 replies
1.1K views
Weird correlation between RIP-seq replicates
rip-seq transformation rna-seq deseq2
updated by DGTool 30 • | written by Hiba 0
1 vote
3 replies
6.4K views
fgsea tutorial issue with BiocParallel
r rna-seq
updated by cwwong13 4 • | written by 1769mkc 127
0 votes
1 reply
1.1K views
Less stringent way of calling variants in PacBio data
bcftools snps variant pacbio 10x
updated by dthorbur 350 • | written by TheCatalyst 0
0 votes
2 replies
1.2K views
Data management of cellranger output
cellranger
written by Lluís R. 124
0 votes
1 reply
978 views
How to handle Single-Level Batch Variable for Batch Correction in RNA-Seq Data
combat rna-seq batch-correction
updated by Ram 4.5K • | written by Nelo 2
0 votes
5 replies
1.7K views
How to get APIs or use web-based bioinformatics tools remotely.
api arnold g2dpepper
updated by GenoMax 16K • | written by Saransh 0
0 votes
4 replies
2.9K views
Do I have to trim anything before I run MAGeCK?
mageck
updated by yc27626 0 • | written by leranwangcs 15
0 votes
6 replies
2.0K views
Remote BLASTx : Strain specific search.
strain_specific_search blastx blast
written by Saransh 0
0 votes
0 replies
3.8K views
prokaryote promoter prediction software
promoter-prediction bacteria prokaryote
updated by Saransh 0 • | written by jk 1
0 votes
0 replies
572 views
News: ICOBLET 2024
conference
written by mohamedsalahamine.benouar 0
0 votes
1 reply
1.3K views
VG Giraffe does not map reads < 39 bases
mapping variation-graph giraffe vg
updated by Ram 4.5K • | written by jdru 1
0 votes
1 reply
856 views
Maker genome softmask
maker genome softmask plant
updated by biofalconch 132 • | written by san96 19
0 votes
2 replies
961 views
How to merge two species of scATAC data
10xatac cross-species
written by 星月 0
0 votes
3 replies
1.5K views
Assistance with Identifying Human Orthologs of Catle SNPs
orthologs snps catle human
updated by GenoMax 16K • | written by Star:) 5
1 vote
3 replies
1.8K views
GSEA single cell
gsea scrna-seq
updated by Picasa 71 • | written by SHP 1
0 votes
0 replies
476 views
integrate two already processed 10x multimodal objects - problem
multiome
updated by GenoMax 16K • | written by Sky 1
0 votes
0 replies
988 views
How to use compareCluster ?
gsea rna-seq clusterprofiler deseq2
updated by Ram 4.5K • | written by b8177 1
0 votes
0 replies
915 views
Job: Director of Genomics (full time, remote, non-profit)
microbiology genetics
updated by Ram 4.5K • | written by mmanzella 0
0 votes
0 replies
670 views
Good Primers on Ancestry Methods for Humans
ancestry snv human-genome
updated by Ram 4.5K • | written by sviatoslav.kendall 99
1 vote
2 replies
1.8K views
GGTree flips my trees
r ggtree phylogenetics
written by M. 4
0 votes
1 reply
1.5K views
single cell multi-modal data (CITEseq) batch correction
sccite scrna batch
updated by d.guillotin 0 • | written by nn 3
0 votes
2 replies
934 views
Do I Need to Filter Indels Before Annotation in GATK Funcotator?
gatk annotation funcotator
written by George 3
0 votes
0 replies
534 views
Metabolomics data (Mass spectrometry data) analysis from metabolomics workbench
metabolomics xcms metabolomics-workbench ms-data camera
written by microorganism_001 3
0 votes
1 reply
1.1K views
verifyBAMID in snakemake script error
config snakemake bam vcf verifybamid
updated by Jesse 94 • | written by Peter Chung 21
0 votes
0 replies
602 views
Why are total read counts of KrakenUniq different from Kraken2?
krakenuniq kraken2
updated by GenoMax 16K • | written by Sarrah Rose 0
0 votes
0 replies
511 views
ReactomeGSA adjustment for confounding variables
pathway-analysis reactomegsa batch-effect
updated by Ram 4.5K • | written by Shaimaa Gamal 1
0 votes
6 replies
3.1K views
Cacoa with Seurat analysis
cacoa differential-abundance seurat
updated by GenoMax 16K • | written by Aditya 0
0 votes
3 replies
2.0K views
Ancestry estimation using 1000 genomes as reference
ancestry plink 1000genomes
updated by Jeremy Leipzig 2.3K • | written by kasgel 0
0 votes
4 replies
1.5K views
Output checks during Snakemake pipeline
workflow-management snakemake
written by hpapoli 17
0 votes
1 reply
1.4K views
Seeking advice on methods to calculate ENCODE ChIP-seq data standard M_DISTINCT
chip-seq quality-check encode library-complexity
written by kalavattam 85
0 votes
3 replies
1.3K views
Germline variant - should it be seen in the somatic vcf?
vcf somatic
updated by Ram 4.5K • | written by hello_bioinf 25
1 vote
2 replies
1.3K views
How can I Obtain hg38 cancer mutation and variation files
vcf snv variation mutation
updated by gernophil 15 • | written by kabir.deb 9
0 votes
1 reply
1.2K views
Unsupported attributes (CPU/Memory) for pbcromwell workflow manager
cromwell pacbio hgap4
updated by pbioinf 16 • | written by Zeng Hao 4
0 votes
2 replies
1.1K views
Padjusted value = 1 in wilcox test
fdr rna-seq wilcox
updated by Ram 4.5K • | written by swathy 0
0 votes
1 reply
1.1K views
which haplotypes were saved in .gbz file?
vg
updated by Jouni Sirén 85 • | written by chuanj8848 0
0 votes
8 replies
2.3K views
Segmentation fault (core dumped)
segmentation-fault blat
updated by Ram 4.5K • | written by isha.lily20 1
0 votes
2 replies
1.3K views
CCA integration
single-cell scrna-seq batch-correction
written by kayah 2
0 votes
5 replies
5.1K views
What to consider Bit score or E value
bit_score ngs blastn e_value edna
updated by b.contreras.moreira 49 • | written by koustavroy88 0
0 votes
1 reply
943 views
Autodock Vina not recognizing Chloride ion in ligand.pqbqt file
vina
updated by Mensur Dlakic 3.0K • | written by Sanjukta 0
0 votes
1 reply
913 views
reconstruct ecDNA.
plot human ecdna pacbio pbmm2
updated by Pierre Lindenbaum 17K • | written by María José 1
0 votes
1 reply
867 views
Empty Results from champ.DMP Despite Expected Output
dmr r champ cpg methylation
updated by Basti 210 • | written by Hiam 0
0 votes
1 reply
690 views
Polymorphic Transposable Elements sequence of Human
polymorphic-transposable-element te 1kgp
updated by Ram 4.5K • | written by Shovan 0
0 votes
0 replies
737 views
Classify SNPs from PacBio data
snps pacbio gex pigeon 10x
written by TheCatalyst 0
0 votes
3 replies
1.3K views
Script for Rstudio
rstudio transcript kallisto analysis
updated by dsull 781 • | written by Pumla 0
0 votes
3 replies
1.9K views
blast against Gene Ontology (GO), KEGG, and EuKaryotic Orthologous Group (KOG) databases
kegg kog blast go
updated by Mensur Dlakic 3.0K • | written by Bushra Bibi 8
1 vote
3 replies
2.7K views
GraphAligner/vg surject - alignment output nonsense?
vg-toolkit graphaligner vg vg-surject vgteam
updated by stringsAsBaxters 0 • | written by Andrew 3
0 votes
0 replies
553 views
cuffdiff
cuffdiff
updated by Ram 4.5K • | written by chavanrenuka852 0
0 votes
6 replies
2.3K views
If changing the RNA-Seq count normalisation method changes the DGE and downstream analysis results?
tpm normalisation fpm
written by Bushra Bibi 8
7 votes
20 replies
48K views
Generating consensus sequence from bam file
genome samtools bwa fasta
updated by jkbonfield 133 • | written by chparada 7
0 votes
2 replies
1.3K views
Doublets in scRNAseq analysis
doublet scrnaseq pbmc
written by Binghong 4
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