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0 votes
1 reply
917 views
Sampling distribution of cosine similarity
rna-seq
updated by james.hawley • james.hawley • written by jayeshkumarsundaram • jayeshkumarsundaram
0 votes
1 reply
894 views
usually retained introns
intron alternative retention splicing
updated by Eric Lim Eric Lim • written by adi.gershon1 • adi.gershon1
2 votes
2 replies
1.3K views
How to Handle Unbalanced RNA-seq Data (710 vs. 15 Samples) Using DESeq2?
r deseq2 unbalanced rna-seq groups
updated by Trivas • Trivas • written by Joe Kherery Joe Kherery
0 votes
3 replies
1.4K views
Benchmark hg19 vcf by hs37d5 vcf
hs37d5 benchmark hg19 giab
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ThomasLam • ThomasLam
0 votes
1 reply
852 views
How do you compare HLA allele frequencies between two populations?
allele-frequency hla
updated by dthorbur dthorbur • written by Moschi • Moschi
0 votes
4 replies
1.5K views
Heatmap for DEGs
seq heatmap rna
written by 4732b159 • 4732b159
1 vote
0 replies
802 views
News: RNAseq and Single Cell Analysis Online Courses @ Edinburgh Genomics
rna-seq single-cell workshop
updated by Ram Ram • written by Kat @ EdGe • Kat @ EdGe
0 votes
11 replies
3.0K views
Convert Gene ID To Gene Name
geneid
written by min • min
1 vote
5 replies
2.1K views
Converting GFA to rGFA
gfa
written by Ric Ric
0 votes
0 replies
1.3K views
Blog: Metagenomics: Host DNA Removal or Not?
sequencing. shotgun metagenomics. metagenomic
written by Novogene • Novogene
0 votes
8 replies
2.4K views
How to perform BLASTn on a large 348kb phage genome?
blastn
updated by GenoMax GenoMax • written by inamswati09 • inamswati09
0 votes
2 replies
2.0K views
Apply Plink2 Score - Error Invalid chromosome code
plink plink2 pgsc_calc plink2score
updated by Ruijiang HAN • Ruijiang HAN • written by h171linux • h171linux
0 votes
4 replies
2.2K views
PLINK error doing a GWAS
phenotype plink covariates association gwas
updated by chrchang523 chrchang523 • written by david.badenas.01 • david.badenas.01
0 votes
6 replies
2.1K views
Analyzing PCA Clustering from PLINK Output
plink
written by Smriti • Smriti
2 votes
17 replies
7.5K views
Current best practive to liftOver many SNVs from hg19 to GRCh38
liftover
written by User 7754 User 7754
0 votes
6 replies
1.9K views
gene naming
gene-names ensembl blast
updated by GenoMax GenoMax • written by sasogalaxy90 • sasogalaxy90
0 votes
3 replies
1.6K views
Affymetrix microarray
gene-expression probes microarray
updated by Ram Ram • written by Shaimaa Gamal • Shaimaa Gamal
0 votes
2 replies
1.2K views
Why does 1 variant produce 3 genes as a result?
gatk snpeff
updated by Kevin Blighe Kevin Blighe • written by mgranada3 • mgranada3
0 votes
4 replies
1.8K views
Batch correction in RNAseq
rna-seq batch-correction
updated by Kevin Blighe Kevin Blighe • written by Esraa • Esraa
0 votes
1 reply
1.4K views
WGCNA - dendogram: How to interpret alterations of clusters
clustering transcriptomics wgcna rna
updated by Ram Ram • written by christiantd • christiantd
0 votes
1 reply
1.8K views
Batch Effect Correction in RNA-seq Data Using SVA and DESeq2
sva batch deseq2 rna-seq
updated by Kevin Blighe Kevin Blighe • written by Nelo • Nelo
0 votes
0 replies
639 views
News: Phylogenomics course
multispecies-coalescent-model bayesian-inference phylogenomics divergence-time maximum-likelihood
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
987 views
Ethnicity information in GTEx dataset
metadata gtex
updated by GenoMax GenoMax • written by husensofteng husensofteng
0 votes
1 reply
639 views
How can I flag possible errors in the handbook collection?
feedback
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Fanta • Fanta
0 votes
2 replies
1.2K views
RNA-seq and Chip Seq alignment
chip-seq rna-seq alignment
updated by Ram Ram • written by alphaflylizard • alphaflylizard
2 votes
6 replies
9.2K views
Download Hg18 Snp Database
snp
updated by DareDevil DareDevil • written by Ardmore • Ardmore
0 votes
4 replies
2.8K views
Microbial PacBio metagenomes and MAG pipeline (assembly/binning) METABAT
binning mag pacbio metabat
updated by dportik • dportik • written by l.gallucci • l.gallucci
0 votes
0 replies
1.1K views
Job: Job opening for a Computational Biologist position at Weill Cornell Medical College, New York , USA
computational-genomics cornell transcriptomics gi-oncology
updated by Ram Ram • written by mas9313 • mas9313
1 vote
10 replies
2.4K views
ncRNA database for mus
contamination ncrna sequencing
updated by Jack Tierney • Jack Tierney • written by tommy • tommy
0 votes
1 reply
2.9K views
Seurat V5 Subscript Out of Bounds Error
seurat scrna
updated by bk11 • bk11 • written by KokiBio • KokiBio
1 vote
0 replies
1.3K views
News: Course - Machine Learning for Multi-Omics Integration
machine-learning big-data multi-omics data-integration deep-learning
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
4 replies
1.7K views
Overlapping reads between two BED windows
samtools bam bedtools coverage
written by pablo pablo
0 votes
0 replies
500 views
Are there reliable assays other than genome sequencing, to measure tumor heterogeneity?
ngs tumor-heterogeneity wgs
updated by Ram Ram • written by anubratadas • anubratadas
0 votes
1 reply
993 views
Gene Regulatory Network Inference Data Needed
grn scatac-seq scrna-seq single-cell gene-regulatory-networks
updated by Ram Ram • written by Manuel Sokolov Ravasqueira • Manuel Sokolov Ravasqueira
1 vote
1 reply
989 views
Remove microbes(cobionts) contamination: before or after insect de novo genome assembly?
contamination genome assembly
updated by Philipp Bayer Philipp Bayer • written by hankool • hankool
1 vote
9 replies
6.2K views
Error Muscle alignment (msa package, through Rscript)
msa r muscle
updated by ulrich.bodenhofer • ulrich.bodenhofer • written by alnam • alnam
1 vote
1 reply
705 views
Metatranscriptome pipeline: taxonomy and functional recover
metatranscriptome pipeline phyloflash
updated by jeevii • jeevii • written by l.gallucci • l.gallucci
0 votes
5 replies
1.5K views
SNPs are not detected.
bcftools snp wgs
updated by Pierre Lindenbaum Pierre Lindenbaum • written by R • R
0 votes
5 replies
1.7K views
Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
disturbution cutadapt adapter trimming fastqc
updated by dsull dsull • written by ashaneev07 • ashaneev07
0 votes
2 replies
962 views
ONT Improved RCA Barcoded Plasmid Sequencing
ont plasmid-sequencing nanopore ngs
updated by Ram Ram • written by thewiggler • thewiggler
0 votes
1 reply
945 views
DEseq2 interactions
deseq2
updated by Ram Ram • written by drajangirija • drajangirija
1 vote
4 replies
1.4K views
Genotype File
genotype
updated by dsull dsull • written by goyal.shiwali • goyal.shiwali
2 votes
4 replies
1.4K views
bcftools AA annotation failing
bcftools vcf ancestral-allele
written by Whirlingdaf • Whirlingdaf
0 votes
8 replies
2.5K views
Alignment of multiple files using STARSolo
starsolo
written by otieno43 • otieno43
0 votes
3 replies
2.4K views
are illumina fastq files typically split by lane?
illumina fastq
updated by swbarnes2 swbarnes2 • written by npb27 • npb27
0 votes
0 replies
746 views
News: Course: Introduction to Deep Learning
deep-learning machine-learning python convolutional-neural-network
written by Physalia-courses Physalia-courses
3 votes
0 replies
26K views
Herald: The Biostar Herald for Thursday, August 22, 2024
herald
written by Biostar Biostar
0 votes
8 replies
3.8K views
Canu genome assembly output
flye assembly fusarium canu fungus
written by SomeOne • SomeOne
0 votes
1 reply
1.3K views
Issue with ANGSD realSFS
heterozygosity realsfs angsd
written by Begonia_pavonina • Begonia_pavonina
0 votes
5 replies
2.8K views
Extracting supplementary reads from bam file
samtools bwa-mem
updated by cmdcolin cmdcolin • written by g1ang • g1ang
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