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1 vote
0 replies
804 views
How to identify temporal differential gene expression patterns among cell types in scRNA-seq
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Quality check pipeline for PCR cDNA ONT sequencing output.
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updated by Ram 4.5K • | written by Sbrillo 1
2 votes
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p value of significance for overlapping peaks
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updated by i.sudbery 2.3K • | written by qudrat.nii 4
2 votes
9 replies
4.9K views
Noob question. Samtools says my CRAM from Nebula is wonky, what can I do?
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updated by jkbonfield 133 • | written by cromcruach 8
0 votes
2 replies
2.4K views
Job: Freelance Bioinformatician Required
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updated by BioinfGuru 214 • | written by Simon 0
0 votes
2 replies
1.2K views
CombatSeq introduces clustering in RNA-seq data (miRNA)
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updated by Ram 4.5K • | written by ben.j.wendel 0
2 votes
1 reply
1.3K views
identify sex in a FASTA RNA-Seq file
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updated by Radu Tanasa 15 • | written by pinheirofabiano 14
0 votes
1 reply
1.2K views
Help Needed: Importing and Analyzing GWAS Data from GWAS Catalog in R
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updated by Ram 4.5K • | written by 城玮 0
0 votes
5 replies
1.6K views
Reporting novel species from environmental samples
bacteria 16s genomics
updated by Ram 4.5K • | written by Dunois 301
0 votes
2 replies
1.9K views
Structural alignment of protein
structural-alignment protein
written by Sadik Muzemil 2
1 vote
2 replies
1.4K views
Find RefSeq-Entries with Protein sequences by whether the organisms are considered to be part of (specific) microbiome
refseq microbiome
updated by Mensur Dlakic 3.0K • | written by Schmoho 1
1 vote
2 replies
149K views
FastTree error: Non-unique name 'xxxxx' in the alignment
fasttree orthofinder phylogeny mafft
written by eedeaguiar 1
0 votes
0 replies
607 views
Number of ESVs greater than OTUs'?
denoising otu asv
written by alenew.am 1
0 votes
1 reply
877 views
Hi-C analysis
hic
updated by GenoMax 16K • | written by sk_24 0
0 votes
0 replies
809 views
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0 votes
4 replies
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vcf file filtration w.r.t. missingness per snps and unmapped snps
missingness-per-snp unmaped-snps
written by Bushra Bibi 8
0 votes
1 reply
910 views
find marker using scRNAseq data
scrnaseq biomarker
updated by allingt 4 • | written by kayah 2
1 vote
1 reply
1.2K views
Gabor Wavelet Transform on DNA sequence in python
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updated by Ram 4.5K • | written by bkffadia 1
0 votes
0 replies
771 views
VCFTools Order of Flags Inquiry
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updated by Medhat 981 • | written by S 0
1 vote
8 replies
6.4K views
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updated by Dunois 301 • | written by ibraaaheeeem 1
0 votes
0 replies
912 views
News: gnomAD v4 is now available on OpenCRAVAT!
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updated by Ram 4.5K • | written by OpenCRAVAT 1
0 votes
3 replies
1.2K views
How can studies compare microarray datas with rna-seq?
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updated by Zhenyu Zhang 130 • | written by Znow 2
1 vote
0 replies
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1 vote
4 replies
1.9K views
Estimating transcript integrity after cDNA sequencing for long read data (Nanopore)
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updated by GenoMax 16K • | written by Rox 146
0 votes
3 replies
1.4K views
Unaligned rRNA in RNAseq in balb/cj mouse
reference-genome rna-seq
updated by dsull 781 • | written by karlensberg 0
0 votes
1 reply
1.4K views
Methods for calculation of TMB via GENIE/cBioPortal data
genie tmb
updated by Zhenyu Zhang 130 • | written by Andrew 0
0 votes
0 replies
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written by WS_jobs 0
0 votes
1 reply
2.8K views
creating assay for seurat object
assay seurat
updated by CJP-OHRI 3 • | written by Sky 1
4 votes
10 replies
12K views
Duplicates In The Context Of Deep Sequencing
sequencing duplicates
updated by zdzakula 1 • | written by KCC 409
0 votes
4 replies
1.7K views
Getting a list of up- and downregulated genes using DESeq2
geneid deseq2
updated by Istvan Albert 10K • | written by duplessisantzel 0
0 votes
1 reply
964 views
iqtree error
iqtree
updated by Ram 4.5K • | written by chopinone 0
0 votes
1 reply
967 views
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conference
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0 votes
3 replies
2.3K views
remove the letter a from a biplot in ggplot
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updated by kalavattam 85 • | written by Assa Yeroslaviz 197
0 votes
1 reply
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How to extract reads by ID from Bracken (and not from Kraken2)
bracken extractreads
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1 vote
0 replies
1.2K views
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0 votes
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827 views
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0 votes
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Find DE in single cell RNA sequencing
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0 votes
3 replies
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NA Values Appearing After Log Transformation of array Data
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updated by Ming Tommy Tang 469 • | written by frankhailey645 0
0 votes
1 reply
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Pathway analysis for mouse gene sets
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updated by Ming Tommy Tang 469 • | written by iamsmor 0
0 votes
2 replies
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How can I get the list of all human ensembl transcript ids?
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updated by Louisse_Ensembl 21 • | written by ramiro.barrantes 6
0 votes
0 replies
528 views
Extracting Phylogenetic Outgroup Sequence from Reference Genome with BWA/SAMtools
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2 votes
0 replies
538 views
Plotting effects in Dirichlet regression
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0 votes
5 replies
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rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
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0 votes
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Adjusting MACS3 --slocal and --llocal parameters for small-genome organisms like S. cerevisiae?
yeast poisson chip-seq macs3 peak-calling
written by kalavattam 85
1 vote
1 reply
1.1K views
Why does the AD value of my VCF file display 3 values?
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updated by Jeremy Leipzig 2.3K • | written by mgranada3 6
0 votes
0 replies
722 views
Normalising and splitting TCGA data into train and test sets
rna-seq vst deseq2 tcga
written by RajSehmbi 0
0 votes
3 replies
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Integrate several multiome objects
scatac-seq multiome seurat scrna-seq
updated by GenoMax 16K • | written by Sky 1
2 votes
2 replies
1.4K views
Resources for pangenome?
pangenome
updated by colindaven 844 • | written by guntul 4
0 votes
2 replies
1.6K views
Extracting normalized counts from RDS (Seurat) file
seurat scrna-seq harmony snrna-seq
updated by Ming Tommy Tang 469 • | written by uyeiveycdikcdukyoz 0
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