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0 votes
2 replies
1.1K views
Germline and somatic SNPs in same or different allele
germline vcf phasing somatic
written by Nacho del Valle • Nacho del Valle
0 votes
5 replies
2.0K views
Extracting human exome from GTF file
gtf human exons
updated by Istvan Albert Istvan Albert • written by Eugenio • Eugenio
0 votes
0 replies
560 views
AlphaFold3 molecular docking
alphafold3 ligand moleculardocking
written by iamsmor • iamsmor
0 votes
4 replies
3.2K views
Is it Necessary to Use Raw Data for SCTransform When Regressing Out Cell Cycle Genes?
sctransform
written by Kimaya • Kimaya
0 votes
6 replies
1.8K views
Batch correction preserving biological difference
scrna-seq batch-correction
written by noodlejackson • noodlejackson
0 votes
2 replies
1.5K views
Analyzing RNA-seq data with Salmon
quantifying rnaseq data countmatrix salmon
written by Eduardo Oñate • Eduardo Oñate
0 votes
1 reply
778 views
Opposite REF and ALT alleles
reference-allele eqtl alternative-allele gwas
updated by Ram Ram • written by a.papadam • a.papadam
0 votes
0 replies
555 views
(metagenomic) Bins exceeding genome in length
binning metagenomic
written by alenew.am • alenew.am
0 votes
0 replies
916 views
News: Online course - Shotgun Metagenomics: Processing and Analysis
prokka metaphlan metagenomics strainphlan panphlan
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
6 replies
4.9K views
Downloading paired end fastq data from SRA
sra single-cell rna-seq
written by Matheus • Matheus
0 votes
3 replies
1.1K views
Find the CDS region of the gene we are interested in in multiple unannotated genomes
genome cds bioinformation
updated by GenoMax GenoMax • written by 雨 • 雨
0 votes
0 replies
658 views
Functional normalization using minfi::preprocessFunnorm and control PCs in later analyses
normalization ewas epigenome preprocessing
updated by Ram Ram • written by mendopsy • mendopsy
0 votes
0 replies
511 views
Package to design fragment tiling library
protein
written by ar_nabbi • ar_nabbi
0 votes
4 replies
3.7K views
How to understand differences in duplication rates between picard MarkDuplicates and fastp
duplication-rate rna-seq fastp picard
written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
5 replies
1.8K views
Compatibility of IonTorrent BAM Files for HRD Analysis with nf-core/oncoanalyser
nf-core hrd iontorrentplatform ngs oncoanalyser
written by Nour-eddine • Nour-eddine
0 votes
0 replies
927 views
Job: Freelance Expert in Human Skin Microbiome
multiomics skin-microbiome metagenomics microbiota
updated by Ram Ram • written by Simon • Simon
1 vote
6 replies
2.0K views
Python for pdf reports
cancer python3 reports
updated by JustinZhang • JustinZhang • written by prs • prs
0 votes
0 replies
536 views
Different position for same gene using annotatePeak from ChIPseeker
chipseeker atacseq
written by QX • QX
0 votes
0 replies
536 views
plotHeatmap from deeptools explain
atac-seq
written by QX • QX
1 vote
4 replies
8.8K views
Kraken2 with Nanopore reads
kraken2 nanopore kraken
updated by ChillarAnand • ChillarAnand • written by predeus predeus
0 votes
1 reply
1.1K views
Using Ensembl Gene IDs for Ontology Analysis
david ensembl reactome ontology-analysis
updated by LChart LChart • written by saamhasan55 • saamhasan55
1 vote
1 reply
2.3K views
AlphaFold 3 - how to check MSA depth?
modeling protein interaction alphafold
updated by dthorbur dthorbur • written by GLG • GLG
1 vote
2 replies
1.1K views
Short tandem repeat (STR) expansions identificaiton workflow from RNA-seq data
rna-seq str
updated by Ram Ram • written by Shicheng Guo Shicheng Guo
0 votes
0 replies
608 views
CNVkit metrics normal range
cnvkit cnv metrics
written by Mateo • Mateo
0 votes
7 replies
2.8K views
Generate Max Number of DNA Sequences separated by a given Hamming distance
hamming-distance barcode variants dna
written by rtrende • rtrende
0 votes
1 reply
902 views
Canu Output Explanation
fungi canu genome assembly
updated by JC JC • written by SomeOne • SomeOne
0 votes
4 replies
1.5K views
Recommendations for performing Bulk RNA sequencing on non-model organism with poor genome annotation?
rna-seq
updated by Trivas • Trivas • written by Mark • Mark
0 votes
1 reply
2.6K views
Can I use snp data for iqtree?
alignment vcf iqtree variant-calling
updated by Ram Ram • written by ylkim9 • ylkim9
2 votes
5 replies
3.4K views
LD Pruning in GWAS
plink pca pruning ld gwas
updated by LauferVA LauferVA • written by Smriti • Smriti
0 votes
2 replies
1.1K views
Adapter trimming WGS Illumina DNA PCR free kit with BBduk
bbduk adapter-trimming wgs
written by omicsfury • omicsfury
0 votes
3 replies
1.8K views
Seeking Advice on Using `edgeR` and `variancePartition` for RNA-seq Data with Multiple Tissues and Patients
linear-mixed edger modeling variancepartition
updated by Gordon Smyth Gordon Smyth • written by h.moosavi57 • h.moosavi57
0 votes
1 reply
954 views
How to create a phylogenetic tree
need i help some
updated by Joe Joe • written by anna • anna
0 votes
1 reply
1.8K views
Converting vg and gfa files?
gfa pangenome vg graphs
updated by colindaven colindaven • written by guntul • guntul
0 votes
0 replies
512 views
Using RSEM after Cuffcompare
rna-seq cuffcompare rsem
written by ZZOYEA • ZZOYEA
0 votes
3 replies
1.9K views
Convert "Locus Tag" to a RefSeq ID or ENSEMBL ID
rna-seq
updated by GenoMax GenoMax • written by min • min
0 votes
3 replies
929 views
Single cell whole genome sequence
single-cell wgs
updated by GenoMax GenoMax • written by drajangirija • drajangirija
0 votes
0 replies
535 views
In the absence of lncRNA annotations, how to screen out reliable lncRNA?
synthetic plant lncrna
written by 晨 • 晨
0 votes
1 reply
1.1K views
Met 500 data
somatic-variation copy-number
updated by Kevin Blighe Kevin Blighe • written by maryak • maryak
0 votes
3 replies
1.3K views
3 samples (control) vs 3 samples (condition) 100M coverage data
reads
updated by Kevin Blighe Kevin Blighe • written by shinyjj • shinyjj
0 votes
2 replies
1.5K views
Explaining my heatmap for PC1 and my PC2 with gene list
pca heatmap
updated by Kevin Blighe Kevin Blighe • written by Pumla • Pumla
0 votes
1 reply
1.6K views
How to deal with warnings from PLINK while performing QC using HAPMAP data ?
qc hapmap plink gwas
updated by Kevin Blighe Kevin Blighe • written by Yugan Gogul Muthukumar • Yugan Gogul Muthukumar
0 votes
1 reply
1.4K views
GWAS on traits non-normally distributed
normality gwas phenotypes
updated by Kevin Blighe Kevin Blighe • written by Noctiluca • Noctiluca
0 votes
14 replies
3.9K views
DEseq2 on expected counts
deseq2 normalize raw-counts
updated by Kevin Blighe Kevin Blighe • written by lyan125 • lyan125
0 votes
2 replies
1.1K views
VCF files
gatk vcf homo-sapiens
updated by Kevin Blighe Kevin Blighe • written by Sanazarghami4444 • Sanazarghami4444
0 votes
1 reply
979 views
Values of relatedness matrix exceed 0 and 1
cgta matrix snpgdsgrm relatedness
updated by Kevin Blighe Kevin Blighe • written by csak_anna • csak_anna
0 votes
1 reply
1.3K views
Downloading metadata of all insect SRA sequences from NCBI SRA
database ncbi sra
updated by Philipp Bayer Philipp Bayer • written by nitinra • nitinra
0 votes
3 replies
1.1K views
Pfam only identifies collagen
rna-seq lncrna
updated by Ram Ram • written by Eduarda • Eduarda
0 votes
1 reply
878 views
How to split the aligned output from SortMeRNA into forward and reverse sequences
metatranscriptomic sortmerna
updated by Pierre Lindenbaum Pierre Lindenbaum • written by eimanpharmacist • eimanpharmacist
0 votes
5 replies
2.1K views
Remove part of a header in a fasta file
fasta
updated by bk11 • bk11 • written by kcl58759 • kcl58759
0 votes
3 replies
3.3K views
rna-seq heatmap z-score calculation - TPM?
heatmap rnaseq
updated by ATpoint ATpoint • written by lyc1ne • lyc1ne
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