Pathway analysis for mouse gene sets · Biostar

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Pathway analysis for mouse gene sets

Hello everyone

I have done RNA sequencing analysis for mouse gene sets and now I want to do pathway analysis. I want to use Generally Applicable Gene-set Enrichment tool (GAGE) for those, but I am not sure it is useful and I want to get ideas if it is a good choice or are there better tools for mouse genesets. If anyone has experience with this, I would be grateful to hear from you.

mouse gage pathway-analysis gene-enrichment

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updated 1.9 years ago by Ming Tommy Tang

• written 1.9 years ago by iamsmor •

1 answer

I have not used GAGE, but this one is very popular https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html

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written 1.9 years ago by Ming Tommy Tang

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