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0 votes
6 replies
1.9K views
Why do a bacterium need CRISPR system?
crispr genetics
written by Farhat 0
0 votes
2 replies
1.7K views
renv does not activate the environment
environment renv
written by Parham 160
0 votes
2 replies
2.6K views
Get PDB files from UniProt IDs
protein-structure uniprot pdb proteins
updated by Wayne 208 • | written by dbykov 0
0 votes
7 replies
2.4K views
Chromium 5’ Next GEM single cell STARsolo
10x star scrna-seq
updated by dsull 781 • | written by hood821 0
11 votes
9 replies
11K views
Tutorial: STARsolo config for 10x Chromium v1, v2, v3
chromium 10x starsolo star
updated by GenoMax 16K • | written by Kevin Blighe 9.0K
1 vote
4 replies
49K views
How to convert a URL into a DOI programmatically
pubmed doi url
updated by Janine 0 • | written by entheologist33 10
0 votes
1 reply
922 views
Identifying statistically significant clusters between two populations of variable sizes
immune-response flow-cytometry
updated by LChart 518 • | written by Stephen 0
0 votes
0 replies
857 views
News: Metabolomics with R/Bioconductor Online Course
metabolomics bioconductor r
updated by Ram 4.5K • | written by Physalia-courses 281
1 vote
4 replies
1.5K views
Biostatistics with few samples in seqRNA counts
biostatistics
updated by dariober 1.5K • | written by Lucas 1
0 votes
4 replies
1.4K views
Multiple SRR files correspond to the same GSM in GEO
fastq geo
written by SHIRUI 1
0 votes
3 replies
1.6K views
How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-Seq Data? Post:
rna-seq
updated by i.sudbery 2.3K • | written by roxana 1
1 vote
6 replies
3.8K views
Snakemake and conda directory structure
management workflow snakemake conda
updated by Michael Dondrup 5.6K • | written by hpapoli 17
0 votes
0 replies
544 views
Molecule toxicity prediction
molecule-toxicity off-target
updated by Ram 4.5K • | written by nataliariedelc 0
0 votes
2 replies
1.1K views
SNPs profile on chromosome 1 curve
profile snps
updated by Brian Bushnell 2.0K • | written by Nuglozeh 1
0 votes
2 replies
1.6K views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
bioconductor rpackage clusterprofiler
written by iamsmor 0
1 vote
8 replies
4.0K views
How To Transform A Location-Type Coordinate Into Integer Or String?
biopython
updated by Asan Emirsale 1 • | written by Jelena_bioinf 4
0 votes
2 replies
1.0K views
Can we treat outliers as batch variables in linear modeling?
r modeling outlier linear
written by aUser 8
1 vote
7 replies
2.8K views
Differential expressed genes - much more DE genes for one factor in the additive model than the interaction model . What may be the reason?
deseq2
written by Pei 26
0 votes
2 replies
980 views
host-specific pathogens taxonomy IDs
taxonomy taxon ncbi host-specific-pathogens
updated by Ram 4.5K • | written by kseniamacias 0
0 votes
1 reply
1.2K views
GenBank submission through BankIt
chloroplast genome featurefile genbank bankit
written by a.bibek52 1
0 votes
0 replies
978 views
News: Cellosaurus release 50 is available
database knowledgebase cell-line
updated by Ram 4.5K • | written by Amos Bairoch 14
1 vote
7 replies
3.4K views
Trying to understand basic DiffBind usage
diffbind chip-seq
written by alejandrocastillaibeas 2
0 votes
1 reply
849 views
How to draw a Manhattan diagram based on the gene names?
gwas manhattan-plot r
updated by Ram 4.5K • | written by jienting0402 0
0 votes
1 reply
939 views
Trying to extract ONLY protein sequences with Augustus
augustus gff sequences protein
updated by dthorbur 350 • | written by eedeaguiar 1
1 vote
3 replies
1.9K views
Identify SNPs with Fst estimates > 0.9 and annotate them
snpeff fst snp
updated by Pierre Lindenbaum 17K • | written by anasjamshed 14
0 votes
0 replies
465 views
Error with KissDE exploreResults()
kissplice kissde
written by david.b.rombaut 1
0 votes
2 replies
968 views
Different result in same species in jellyfish(genome size estimation)
jellyfish genome size
written by ylkim9 0
0 votes
2 replies
1.2K views
ESTIMATE -tidyestimate package- tumour purity
estimate tumour-purity
written by Nona 9
0 votes
13 replies
5.2K views
Can't reproduce harmony results in Seurat
seurat scrna-seq harmony
written by fifty_fifty 10
3 votes
3 replies
1.6K views
Tool: Drawing circular and linear mitochondrial genome diagrams
mitochondria graphics mitogenomics
updated by Brian Bushnell 2.0K • | written by s.j.goodman 5
0 votes
2 replies
1.5K views
Weird looking volcano plot
proteomics volcano-plot plasma
updated by Juan 3 • | written by Harini 1
0 votes
4 replies
1.5K views
Weird outcomes from employing NMF on scRNA-seq data
nmf scrna-seq
written by tujuchuanli 14
0 votes
3 replies
1.5K views
Statistics of methylation experiments
methylation
updated by yura.grabovska 94 • | written by ramiro.barrantes 6
0 votes
0 replies
745 views
News: Course: Metabarcoding in Microbial Ecology
r qiime2 metabarcoding microbial-ecology
written by Physalia-courses 281
0 votes
6 replies
3.4K views
Representable, non-homologous, non-redundant protein database
non-homologous representable non-redundant database proteins
updated by pduda 0 • | written by henry slade 8
0 votes
0 replies
566 views
GWASQC
gwas
written by karthick 1
0 votes
1 reply
1.1K views
ADNI DATASET
adni
updated by colindaven 844 • | written by karthick 1
1 vote
2 replies
1.4K views
gatk-funcotator data source
gatk datasource germline funcotator
written by ashaneev07 5
0 votes
2 replies
1.2K views
how to order paired-end reads to use in kaiju?
taxonomy paired-end-reads kaiju
updated by Ram 4.5K • | written by Gabriel 0
0 votes
1 reply
646 views
Any tutorial on Braker3
tutorial braker3
updated by Mensur Dlakic 3.0K • | written by zsiddiki 0
0 votes
2 replies
1.5K views
What type of graph or visualization would be most appropriate to represent this data for effective comparison of insertion times across sequences?
pacbio numts mtdna genomics
updated by Ram 4.5K • | written by hashim.rana11 4
0 votes
2 replies
2.0K views
Converting genome build from hg38 to hg19 using liftOver via bigsnpr - error fetching file
snp bigsnpr liftover r
updated by kaaz 0 • | written by dam4l 20
0 votes
6 replies
2.9K views
Error Code 3 with fastq-dump
fastq-dump
updated by GenoMax 16K • | written by hgrsce 0
1 vote
0 replies
590 views
Meta-analysis with 2 GEO transcriptomic datasets possible?
meta-analysis geo
written by Dr. 2
3 votes
5 replies
9.2K views
Programs for drawing a circular mitochondrial map, Circos or others?
circos circular-map
updated by Ram 4.5K • | written by Yongjie Zhang 11
0 votes
0 replies
911 views
Understanding how to analyse VEP files and understand the impact of mutations on biological pathways
reactomepa snv vep go
written by namg 0
1 vote
0 replies
715 views
Tool: Welome to try Circle-Map++ for detecting eccDNA
eccdna ecdna dna circle-map circular
written by xiaoguang 16
0 votes
2 replies
1.0K views
Aedes vexans RNA-seq de novo assembly
de-novo rna-seq aedes
updated by Brian Bushnell 2.0K • | written by fluentin44 2
1 vote
2 replies
1.5K views
In Plink2, when converting a VCF file to bed format - how to retain original chromosome names?
plink2 vcf
written by rijan_dhakal2055 1
0 votes
0 replies
538 views
1000 genomes's reference panel
vcf reference genetics
written by Hasan_Daaboul 0
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