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0 votes
0 replies
570 views
Pangenome Construction
pangenome chromosome
written by bioinfo223 1
0 votes
0 replies
587 views
Plotting admixture output with circular barplot using membercoeff.circos
bitev2 membercoeff admixture
written by PKW 11
0 votes
1 reply
1.4K views
STAR aligner STAR: bgzf.c:158: bgzf_open: Assertion `compressBound(BGZF_BLOCK_SIZE) < BGZF_MAX_BLOCK_SIZE' failed.
star aligner bgzf
updated by Ram 4.5K • | written by tedwinkent 0
0 votes
1 reply
1.1K views
Convert CRAM to BAM in pysam
python pysam bam cram
updated by Brian Bushnell 2.0K • | written by sviatoslav.kendall 99
1 vote
12 replies
3.5K views
comparison between a selected genes of a new strain and the same genes of the reference genome
strain genome pipeline
written by avinci1 2
0 votes
0 replies
422 views
Compensation for SSC-A/CD3-PerCP?
compensation flowjo
written by ysun 0
0 votes
3 replies
1.4K views
Looking for some guidance regarding motif ontology
atac-seq motifs homer
updated by jared.andrews07 1.9K • | written by Ronin 1
0 votes
0 replies
466 views
Unicycler hybrid assembly run is frozen for 2 days with no error message
hybrid-assembly unicycler
written by langziv 8
1 vote
0 replies
650 views
Calculating if cell proportions are significant using propeller
regression proportions scrna-seq
written by mropri 17
0 votes
1 reply
904 views
Overestimate of ATAC-seq differential peaks
macs2 atac-seq deseq2
updated by jared.andrews07 1.9K • | written by Darryl 0
0 votes
2 replies
1.6K views
Mapping Mouse RNAseq Marker Genes to Reactome Pathways
rna-seq single-cell pathways reactome
updated by Menna 0 • | written by el24 5
0 votes
3 replies
1.2K views
Finding common genes for evolutionary analyses after finding DEG's from different env. stressed plants
deg galaxy-server rna-seq
written by candy 0
0 votes
2 replies
1.3K views
I need to index a GTF (gene transfer format) annotation file
gatk funcotator gtf hla-typing
updated by Ram 4.5K • | written by doodle 0
0 votes
6 replies
3.7K views
Does the order of the batch variable matter in Limma design matrix?
batch
updated by Gordon Smyth 916 • | written by CTLong 14
0 votes
2 replies
1.1K views
Genomic Context Analysis
genomic-context-analysis neighboring-genes
updated by Ram 4.5K • | written by Thais 0
1 vote
3 replies
1.2K views
Biological replicate for WGS sequencing
ngs biological replicate wgs
updated by GenoMax 16K • | written by octpus616 14
14 votes
21 replies
7.0K views
Tool: New Illumina error mode, new BBTools release (39.09) to deal with it
assembly novaseqx illumina poly-g bbtools
updated by GenoMax 16K • | written by Brian Bushnell 2.0K
1 vote
4 replies
2.2K views
Forum: What companies do you recommend for targeted sequencing?
targeted-sequencing
written by hello_bioinf 25
0 votes
1 reply
852 views
Low Coverage WGS (Human) vs WES Hardware Requirements
macbook-pro wgs
updated by GenoMax 16K • | written by rodrigo.sanchez 0
0 votes
0 replies
717 views
News: Online course: Population Genomic Inference from Low-Coverage Whole-Genome Sequencing Data
low-coverage-wgs angsd population-genomics
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
1.1K views
Intermixed clusters and cell types in UMAP for scRNA-seq analysis
pbmc umap scran-seq
updated by jaro.slamecka 28 • | written by bio_info 2
0 votes
4 replies
2.5K views
CIBERSORTX disable quantile normalization
rna-seq
written by fifty_fifty 10
0 votes
8 replies
3.3K views
How to download Gene annotations (by Ensembl) track on NCBI Sequence Viewer 3.49.0
sequence-viewer ensembl ncbi
updated by kkun 0 • | written by rahu 0
0 votes
0 replies
692 views
Recommended Tool for Somatic SV Discovery in Tumor-Only WES Data
sv wes tumor-only
written by George 3
0 votes
3 replies
1.8K views
Bcftools error: Reference allele does not match the reference
bcftools liftover
updated by Pierre Lindenbaum 17K • | written by ktg25 0
0 votes
0 replies
785 views
Fusion analysis with UMI deduplication
umi fusion deduplication star
written by Xira_D 0
0 votes
2 replies
1.5K views
Limma covariates treatment is changing my significance results
limma differential-expression
written by ijarne 3
0 votes
0 replies
646 views
imputation A1, A2
a1 imputation a2 gwas
written by SeoG 1
0 votes
2 replies
2.0K views
Forum: A guide for beginners in bioinformatics
sequencing ngs
updated by Ram 4.5K • | written by Varshini 0
0 votes
5 replies
2.2K views
bcftools stats not counting samples
bcftools variant-calling
updated by Pierre Lindenbaum 17K • | written by alba 1
8 votes
24 replies
21K views
Tutorial: Associating VDJ clonotyping data with scRNA-seq in Seurat
single-cell rna-seq seurat tcr
updated by garcesj 5 • | written by jared.andrews07 1.9K
17 votes
8 replies
21K views
Tutorial: Integrating VDJ sequencing data with Seurat
vdj seurat sc-rnaseq clonotyping
updated by GenoMax 16K • | written by atakanekiz 33
0 votes
2 replies
1.5K views
WGCNA: Problem with selecting soft threshold below R^2 0.8
r network wgcna
updated by LChart 518 • | written by emilymily77 0
0 votes
0 replies
1.0K views
CellTypist Confidence Scores vs SingleR Delta Scores
single-cell singler celltypeannotation celltypist
written by Manuel Sokolov Ravasqueira 12
0 votes
3 replies
1.9K views
How to Perform Differential Expression Analysis Between Two Species' Transcriptomes?
transcriptomics differential-expression genomics
updated by Michael Dondrup 5.6K • | written by PALA 0
0 votes
0 replies
879 views
News: Course: Introduction to CRISPR
genomeediting crispr evolution
written by Physalia-courses 281
0 votes
1 reply
1.2K views
EnhancerAtlas
enhancer hic
updated by LChart 518 • | written by sk_24 0
0 votes
1 reply
855 views
Error in simulation interaction diagram module of Desmond
simulation md
written by 20212854117sakib 0
0 votes
8 replies
3.3K views
Kallisto: to scaledTPM or not to scaledTPM
tximport kallisto edger rnaseq
updated by Gordon Smyth 916 • | written by IM 0
0 votes
2 replies
2.0K views
How to find potential batch effect for microarray samples?
gene-expression batch-effect microarray
written by namck 0
0 votes
4 replies
1.9K views
CpG coordinates information
methylation human-genome cpg-sites
written by elias01cj 0
0 votes
0 replies
735 views
Comparative proteomics using online mass spec data
mass-spectrometry proteomics
updated by Ram 4.5K • | written by charlieclark1ee 2
0 votes
2 replies
1.1K views
Biostar Handbook issue with doctor.py
doctor.py biostar-handbook
updated by Ram 4.5K • | written by popozan 0
1 vote
6 replies
2.4K views
Is it necessary to give a "limit" SPARQL Disgenet query search?
disgenet rdf sparql
updated by GenoMax 16K • | written by alirejwan.stars1994 0
0 votes
0 replies
698 views
Galaxy docker build
docker galaxy
updated by Ram 4.5K • | written by Lucas 1
0 votes
1 reply
1.2K views
Different insertion times from two methods
pacbio mtdna numts
updated by Ram 4.5K • | written by hashim.rana11 4
0 votes
6 replies
2.1K views
installing ArchR on a mac
r archr
written by Assa Yeroslaviz 197
0 votes
3 replies
2.0K views
python package for Kendall-Colijn distances between phylogenetic trees
biology genealogy evolution
updated by doorholez 1 • | written by Hongjin 0
0 votes
0 replies
702 views
LFQ values from MS counts
ms lfq proteomics mass-spectrometry
updated by Ram 4.5K • | written by sebastian.gregoricchio 3
0 votes
2 replies
1.3K views
BCFTOOLS VIEW parameter?
snp
updated by Pierre Lindenbaum 17K • | written by charlie 0
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