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0 votes
0 replies
502 views
How to calculate inbreeding coefficient out of ROH (Plink)
plink
written by t-ishige 0
0 votes
4 replies
4.2K views
Transcriptome Improvement Using Cell Ranger Count vs. ARC for RNA-Seq Data from Frozen Nuclei in Multimodal Analysis
multiomics scatac cellranger scrna 10x
updated by jared.andrews07 1.9K • | written by NaomiK 0
1 vote
1 reply
617 views
ROAST
rna-seq
updated by GenoMax 16K • | written by Pegasus 13
0 votes
0 replies
536 views
Quorum sensing genes in Bacteria
rna-seq
written by Pegasus 13
0 votes
0 replies
742 views
Uncertainty on Which Data to Use for Alpha Diversity Analysis (Shannon)
iteration shannon rarefaction boxplot alpha
written by Joe Kherery 15
0 votes
0 replies
424 views
Can I use a dataset that has batch effect as a reference in scmap?
scrna-seq annotation
written by D 0
0 votes
2 replies
1.1K views
Track file for the DADA2 pipelne
microbiome-analysis metagenomics dada2 16s-amplicon
written by naveedhasan2000 1
0 votes
2 replies
996 views
Help with data finding.
p_value ncbidataset replot
written by A29J 0
0 votes
0 replies
905 views
News: online course - Metabolomics with R/Bioconductor
metabolomics bioconductor multivariate-data untargeted targeted
updated by Ram 4.5K • | written by Physalia-courses 281
2 votes
9 replies
6.0K views
Creating a Seurat object with Visium public available data
spatial visium 10x
updated by Nat.Nataren 10 • | written by charms.charms 2
0 votes
9 replies
2.6K views
How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days post infection)
multifactor deseq2
written by duplessisantzel 0
0 votes
1 reply
901 views
Noise confounding genes in single cell data
single-cell
updated by Ram 4.5K • | written by carolofharvest 6
0 votes
1 reply
1.0K views
Zea Maize ID conversion
id-conversion zea-mays
updated by Ram 4.5K • | written by SKY 6
0 votes
0 replies
817 views
How to build a spliced pangenome graph and a pantranscriptome
vg
written by Wenhai 0
0 votes
0 replies
623 views
Merging Imputed VCF with Reference Panel VCF
vcf glimpse imputation
written by selplat21 2
0 votes
5 replies
2.6K views
Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
salmon
updated by dsull 781 • | written by Haad 0
0 votes
1 reply
1.1K views
Harmony integration of integarted samples
scrna-seq harmony
updated by jared.andrews07 1.9K • | written by fifty_fifty 10
0 votes
2 replies
1.3K views
index sequence in fastq header
fastq
written by hpapoli 17
0 votes
3 replies
1.2K views
Build RG information for BWA
bwa
updated by GenoMax 16K • | written by hpapoli 17
0 votes
21 replies
8.1K views
Help Choosing a Workstation for a New Bioinformatics Service
ngs hardware workstation
updated by i.sudbery 2.3K • | written by AresSanchz 0
0 votes
0 replies
691 views
spike-in-methods in 16s microbial analysis
16s spike-in microbiome
written by mrashad 9
0 votes
0 replies
564 views
Is this phasing result normal?
haplotyping sequencing phasing nanopore
written by njornet 2
0 votes
0 replies
418 views
Selection Pressure Analysis
selection-pressure ka-ks
updated by Ram 4.5K • | written by zhu 0
0 votes
2 replies
1.3K views
X chromosome in bedtoolsIntersect
bedtools
updated by Pierre Lindenbaum 17K • | written by wiscoyogi 4
0 votes
1 reply
1.2K views
est-sfs error
est-sfs non-model-organism ancestral-allele
updated by shanghonyu 0 • | written by Whirlingdaf 6
0 votes
8 replies
2.1K views
cellranger count error:
cellranger
written by CRISPYCC 0
0 votes
1 reply
975 views
Integration of paired and single-end SRA
paired-end single-end vcf resequencing
updated by Brian Bushnell 2.0K • | written by reza 30
1 vote
1 reply
1.3K views
High inconsistency between edgeR and DESeq2
log-ratio edger glm deseq2
updated by bk11 312 • | written by lyan125 1
0 votes
0 replies
498 views
how to make a recombination map using a family of a diploid bee "mom" and 5 haploid "sons"
sequencing recombination-map
updated by Ram 4.5K • | written by dovasuttner 0
2 votes
0 replies
1.0K views
Job: Assistant, Associate, or Full Project Scientist in Cell & Developmental Biology UC San Diego
biology academia ucsd
written by UCSDBioSci 3
1 vote
3 replies
1.6K views
Snakemake - Missing output files
snakemake
updated by Ram 4.5K • | written by am29 6
0 votes
6 replies
1.8K views
Best practice for gene ontology/pathway/geneset enrichment in 10x data
r seurat scrna
updated by jared.andrews07 1.9K • | written by yura.grabovska 94
0 votes
2 replies
3.4K views
Plink HWE QC question
hwe plink p-value
updated by chrchang523 1.1K • | written by janny.lau 1
0 votes
0 replies
638 views
Can non-integer data be used as input for Monocle3?
pseudotime scrnaseq trajectory-analysis monocle3
updated by Ram 4.5K • | written by annadv 1
0 votes
2 replies
870 views
multiple sequence alignmet
msa
updated by Mensur Dlakic 3.0K • | written by harry 4
0 votes
4 replies
1.4K views
Different result by bowtie2
bowtie2
updated by GenoMax 16K • | written by daffodil 1
0 votes
0 replies
571 views
Strand inconsistency between Long read tool and minimap2?
minimap2
written by shinyjj 7
0 votes
1 reply
2.6K views
Problems with using Phobius
phobius fasta sequence
updated by Ram 4.5K • | written by logleg92029 0
0 votes
5 replies
2.1K views
Some questions about motif enrichment in Homer
motif-enrichment methylation dna
updated by Srinka 2 • | written by diqixiaoyaoer 2
0 votes
1 reply
704 views
Genomics Features Extraction (Promoter, 5'UTR, 3'UTR, Intergenic, exnoic, intronic etc)
genomics biology
updated by Ram 4.5K • | written by shabbas12 1
0 votes
0 replies
656 views
Cuffcompare annotation and class code
rna-seq cuffcompare
written by ZZOYEA 2
0 votes
0 replies
549 views
Analyzing multiple microRNA sequencing GEO datasets at the same time
geo-database rna-seq metavolcano microrna
updated by Ram 4.5K • | written by Alana 0
0 votes
1 reply
1.1K views
How can you determine the mutation rate of mitochondrial DNA for your (Grasshopper) species?
pacbio numts mtdna genomics
updated by Brian Bushnell 2.0K • | written by hashim.rana11 4
0 votes
1 reply
1.2K views
Tandem Mass Tag (TMT) proteomics data analysis
tmt tandem-mass-tag proteomics
updated by Ram 4.5K • | written by F 0
0 votes
1 reply
692 views
Conflict packages R
r
updated by Ram 4.5K • | written by marco.barr 22
0 votes
4 replies
4.1K views
Trimmomatic or Cutadapt not Trimming my Adapters even though I see them clearly in the Fastq-File
rna-seq cutadapt trimmomatic
updated by Brian Bushnell 2.0K • | written by obsto123 0
0 votes
6 replies
2.2K views
Understanding bedtools coverage for datasets with in-dels.
ont bedtools mapping reads coverage
written by Shakunthala Natarajan 2
0 votes
4 replies
1.9K views
De novo sequencing?
de-novo-sequencing
updated by Ram 4.5K • | written by Abdul Rafay Khan 122
1 vote
10 replies
3.5K views
Find all sequences with adapters without trimming them off
cutadapt fastq
updated by Brian Bushnell 2.0K • | written by Freyda 1
8 votes
4 replies
2.2K views
Forum: Awesome awesomeness bioinformatics
bioinformatics awesome
written by Juke34 949
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