This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
13 replies
5.2K views
Can't reproduce harmony results in Seurat
seurat scrna-seq harmony
written by fifty_fifty • fifty_fifty
3 votes
3 replies
1.5K views
Tool: Drawing circular and linear mitochondrial genome diagrams
mitochondria graphics mitogenomics
updated by Brian Bushnell Brian Bushnell • written by s.j.goodman • s.j.goodman
0 votes
2 replies
1.5K views
Weird looking volcano plot
proteomics volcano-plot plasma
updated by Juan • Juan • written by Harini • Harini
0 votes
4 replies
1.5K views
Weird outcomes from employing NMF on scRNA-seq data
nmf scrna-seq
written by tujuchuanli tujuchuanli
0 votes
3 replies
1.4K views
Statistics of methylation experiments
methylation
updated by yura.grabovska • yura.grabovska • written by ramiro.barrantes • ramiro.barrantes
0 votes
0 replies
734 views
News: Course: Metabarcoding in Microbial Ecology
r qiime2 metabarcoding microbial-ecology
written by Physalia-courses Physalia-courses
0 votes
6 replies
3.4K views
Representable, non-homologous, non-redundant protein database
non-homologous representable non-redundant database proteins
updated by pduda • pduda • written by henry slade henry slade
0 votes
0 replies
553 views
GWASQC
gwas
written by karthick • karthick
0 votes
1 reply
1.1K views
ADNI DATASET
adni
updated by colindaven colindaven • written by karthick • karthick
1 vote
2 replies
1.4K views
gatk-funcotator data source
gatk datasource germline funcotator
written by ashaneev07 • ashaneev07
0 votes
2 replies
1.2K views
how to order paired-end reads to use in kaiju?
taxonomy paired-end-reads kaiju
updated by Ram Ram • written by Gabriel • Gabriel
0 votes
1 reply
637 views
Any tutorial on Braker3
tutorial braker3
updated by Mensur Dlakic Mensur Dlakic • written by zsiddiki • zsiddiki
0 votes
2 replies
1.4K views
What type of graph or visualization would be most appropriate to represent this data for effective comparison of insertion times across sequences?
pacbio numts mtdna genomics
updated by Ram Ram • written by hashim.rana11 • hashim.rana11
0 votes
2 replies
2.0K views
Converting genome build from hg38 to hg19 using liftOver via bigsnpr - error fetching file
snp bigsnpr liftover r
updated by kaaz • kaaz • written by dam4l dam4l
0 votes
6 replies
2.9K views
Error Code 3 with fastq-dump
fastq-dump
updated by GenoMax GenoMax • written by hgrsce • hgrsce
1 vote
0 replies
582 views
Meta-analysis with 2 GEO transcriptomic datasets possible?
meta-analysis geo
written by Dr. • Dr.
3 votes
5 replies
9.1K views
Programs for drawing a circular mitochondrial map, Circos or others?
circos circular-map
updated by Ram Ram • written by Yongjie Zhang Yongjie Zhang
0 votes
0 replies
893 views
Understanding how to analyse VEP files and understand the impact of mutations on biological pathways
reactomepa snv vep go
written by namg • namg
1 vote
0 replies
703 views
Tool: Welome to try Circle-Map++ for detecting eccDNA
eccdna ecdna dna circle-map circular
written by xiaoguang xiaoguang
0 votes
2 replies
1.0K views
Aedes vexans RNA-seq de novo assembly
de-novo rna-seq aedes
updated by Brian Bushnell Brian Bushnell • written by fluentin44 • fluentin44
1 vote
2 replies
1.4K views
In Plink2, when converting a VCF file to bed format - how to retain original chromosome names?
plink2 vcf
written by rijan_dhakal2055 • rijan_dhakal2055
0 votes
0 replies
531 views
1000 genomes's reference panel
vcf reference genetics
written by Hasan_Daaboul • Hasan_Daaboul
1 vote
0 replies
789 views
How to identify temporal differential gene expression patterns among cell types in scRNA-seq
gene-expression dynamic scrna-seq degs
updated by Ram Ram • written by Chilly • Chilly
0 votes
0 replies
779 views
News: Introduction to Nextflow course
nextflow pipeline workflow-manager reproducibility
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
1.2K views
Quality check pipeline for PCR cDNA ONT sequencing output.
ont-pcr-cdna long-reads rna-seq transcriptome
updated by Ram Ram • written by Sbrillo • Sbrillo
2 votes
1 reply
1.3K views
p value of significance for overlapping peaks
macs2 chip-seq
updated by i.sudbery i.sudbery • written by qudrat.nii • qudrat.nii
2 votes
9 replies
4.9K views
Noob question. Samtools says my CRAM from Nebula is wonky, what can I do?
cram nebula samtools
updated by jkbonfield jkbonfield • written by cromcruach • cromcruach
0 votes
2 replies
2.4K views
Job: Freelance Bioinformatician Required
picrust patric
updated by BioinfGuru BioinfGuru • written by Simon • Simon
0 votes
2 replies
1.2K views
CombatSeq introduces clustering in RNA-seq data (miRNA)
mirna batch-correction rna-seq combat-seq
updated by Ram Ram • written by ben.j.wendel • ben.j.wendel
2 votes
1 reply
1.3K views
identify sex in a FASTA RNA-Seq file
rna-seq
updated by Radu Tanasa • Radu Tanasa • written by pinheirofabiano • pinheirofabiano
0 votes
1 reply
1.1K views
Help Needed: Importing and Analyzing GWAS Data from GWAS Catalog in R
r gwas
updated by Ram Ram • written by 城玮 • 城玮
0 votes
5 replies
1.5K views
Reporting novel species from environmental samples
bacteria 16s genomics
updated by Ram Ram • written by Dunois • Dunois
0 votes
2 replies
1.9K views
Structural alignment of protein
structural-alignment protein
written by Sadik Muzemil • Sadik Muzemil
1 vote
2 replies
1.4K views
Find RefSeq-Entries with Protein sequences by whether the organisms are considered to be part of (specific) microbiome
refseq microbiome
updated by Mensur Dlakic Mensur Dlakic • written by Schmoho • Schmoho
1 vote
2 replies
149K views
FastTree error: Non-unique name 'xxxxx' in the alignment
fasttree orthofinder phylogeny mafft
written by eedeaguiar • eedeaguiar
0 votes
0 replies
588 views
Number of ESVs greater than OTUs'?
denoising otu asv
written by alenew.am • alenew.am
0 votes
1 reply
866 views
Hi-C analysis
hic
updated by GenoMax GenoMax • written by sk_24 • sk_24
0 votes
0 replies
794 views
News: Beyond Beginner R: Advancing Your Coding Skills (Sept 16-19, 2024)
r coding reproducibility programming
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
4 replies
1.3K views
vcf file filtration w.r.t. missingness per snps and unmapped snps
missingness-per-snp unmaped-snps
written by Bushra Bibi Bushra Bibi
0 votes
1 reply
902 views
find marker using scRNAseq data
scrnaseq biomarker
updated by allingt • allingt • written by kayah • kayah
1 vote
1 reply
1.2K views
Gabor Wavelet Transform on DNA sequence in python
python signal-processing dna
updated by Ram Ram • written by bkffadia • bkffadia
0 votes
0 replies
759 views
VCFTools Order of Flags Inquiry
vcf vcftools
updated by Medhat Medhat • written by S • S
1 vote
8 replies
6.3K views
Forum: Dentist interested in bioinformatics
career
updated by Dunois • Dunois • written by ibraaaheeeem • ibraaaheeeem
0 votes
0 replies
889 views
News: gnomAD v4 is now available on OpenCRAVAT!
gnomad genomics opencravat gnomadv4
updated by Ram Ram • written by OpenCRAVAT • OpenCRAVAT
0 votes
3 replies
1.2K views
How can studies compare microarray datas with rna-seq?
rna-seq microarray
updated by Zhenyu Zhang Zhenyu Zhang • written by Znow • Znow
1 vote
0 replies
1.4K views
Job: 2 x PhD / Doctoral position in Biomedical Data Sciences & Bioinformatics for studying human health and disease
r phd biomedicine data-science
updated by Ram Ram • written by a_gruber • a_gruber
1 vote
4 replies
1.8K views
Estimating transcript integrity after cDNA sequencing for long read data (Nanopore)
cdna nanopore rseqc
updated by GenoMax GenoMax • written by Rox Rox
0 votes
3 replies
1.3K views
Unaligned rRNA in RNAseq in balb/cj mouse
reference-genome rna-seq
updated by dsull dsull • written by karlensberg • karlensberg
0 votes
1 reply
1.4K views
Methods for calculation of TMB via GENIE/cBioPortal data
genie tmb
updated by Zhenyu Zhang Zhenyu Zhang • written by Andrew • Andrew
0 votes
0 replies
1.4K views
Job: Bioinformatics Software & Data Engineer at BASF | Nunhems (near Eindhoven , The Netherlands)
basf plants
written by WS_jobs • WS_jobs
Recent Votes
Recent Locations
Recent Replies