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0 votes
0 replies
467 views
differential abundance of two groups using one sample in one of the groups
amplicon_sequencing differential_abundance picrust2 soil_microbiome
written by michele.lamprillo 0
0 votes
1 reply
1.6K views
Removing conda environment created in a snakemake workflow
snakemake
updated by DBScan 53 • | written by hpapoli 17
0 votes
7 replies
1.9K views
Genome Assembly Workflow assessment
flye genome-assembly pilon racon
written by SomeOne 33
0 votes
1 reply
682 views
which is the best cnv tool for both germine and somatic
cnv
updated by GenoMax 16K • | written by Smilesky 0
0 votes
1 reply
1.1K views
Filtering Fastq based on GC content
fastq
updated by GenoMax 16K • | written by hpapoli 17
0 votes
1 reply
1.3K views
Job: Postdoctoral fellow in computational cancer genomics- University of Gothenburg, Sweden
cancer-genomics gwas postdoc
updated by Ram 4.5K • | written by abhishekniroula7 5
0 votes
0 replies
484 views
metatranscriptome analysis pipeline
metatranscriptome
written by SHIRUI 1
0 votes
18 replies
7.1K views
Interpreting phylogenetics tree
phylogenetic-tree itol phylogenetics
updated by Mark 173 • | written by davidmaimoun 6
0 votes
7 replies
2.8K views
cellranger count error:An extremely low rate of correct barcodes was observed for all the candidate chemistry choices for the input
cellranger
written by CRISPYCC 0
0 votes
7 replies
1.7K views
ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
single-cell
updated by dsull 781 • | written by carolofharvest 6
0 votes
1 reply
741 views
How to find overlapping regions of a gene and 18s rRNA sequences for mouse
blast
updated by GenoMax 16K • | written by carolofharvest 6
0 votes
1 reply
849 views
Plotting the control-FREEC data
control-freec cnvs
updated by RD 3 • | written by sainavyav22 0
0 votes
4 replies
1.3K views
Grenedalf - error reads sam, bam, sync files
grenedalf pool-seq
updated by Ram 4.5K • | written by Elizabeth 4
0 votes
2 replies
1.0K views
GAM file columns?
pangenome gam
updated by Pierre Lindenbaum 17K • | written by Uveyik 8
0 votes
4 replies
1.5K views
Trim galore error - directory completely empty
trimgalore
updated by GenoMax 16K • | written by x 0
0 votes
0 replies
524 views
Keep seeing same degs everytime after filtering and clustering (scRNA)
single-cell
updated by Ram 4.5K • | written by carolofharvest 6
0 votes
1 reply
899 views
Proxy Variant SNP for PRS
snp prs proxy
updated by Sam 484 • | written by curious_butterfly 0
1 vote
2 replies
764 views
Identify unique amino acids in a seuence of interest present in a MSA block
multiple-alignment-sequence
updated by b.contreras.moreira 49 • | written by sushmitapaul007 1
0 votes
2 replies
1.1K views
GenomicsDBImport with sample map in snakemake
snakemake
written by hpapoli 17
0 votes
8 replies
2.0K views
Beagle Gives Error no matter what i do
beagle impute snps
written by Emilie 1
0 votes
7 replies
3.4K views
Snippy does not find SNPs I know are present
snippy-multi snippy snps
updated by Michael Dondrup 5.6K • | written by blur 30
0 votes
11 replies
3.8K views
KeepBothReads in Trimmomatic
trimmomatic pe-reads
written by mariannapauletto 9
0 votes
0 replies
512 views
Hi-C Data and RNA-seq in a Non-Cell-Specific Context (Human Blood)
rnaexpression interactions repeats hi-c
written by Smriti 4
0 votes
2 replies
1.4K views
golden genome NA12878
golden genome
written by heureuse 1
0 votes
3 replies
1.7K views
samtools command not found in bash script
samtools alias
updated by dr_cfoster 125 • | written by Meghan.T 1
0 votes
1 reply
958 views
Interpreting MA plot - DEG
r deg ggplot2
updated by Ram 4.5K • | written by NEWBIE 0
2 votes
1 reply
2.2K views
Understanding behaviour of SCTransform in Seurat
seurat scrnaseq normalization
updated by alg507 0 • | written by yura.grabovska 94
0 votes
0 replies
1.2K views
Missing value where TRUE/FALSE needed in Seurat's IntegrateLayers(), unsure if error with Seurat or session
seurat
written by K 0
0 votes
4 replies
1.4K views
Looking for proteins play role in cardiovascular diseases (disease ontology)
proteomics protein uniprot disease-ontology
written by Bendegúz 0
0 votes
2 replies
1.8K views
Job: Variant Analyst Opening in Qatar
clinical-interpretation cnv snv
updated by Medhat 981 • | written by rajeefa 1
0 votes
1 reply
645 views
Convert vcf to specified input
snp vcf
updated by Pierre Lindenbaum 17K • | written by thomm80 0
0 votes
4 replies
1.7K views
Genotype imputation without a reference panel
genotyping-array-data reference-panel genotype-imputation
updated by Pine 2 • | written by Mohadese 0
0 votes
0 replies
559 views
Significant colocalisation across two GWAS SumStats with opposite "effect sizes"
coloc effect-size gwas colocalisation
written by Pine 2
0 votes
4 replies
1.4K views
MoCha For CNV calling
mocha cnv
updated by Ram 4.5K • | written by heureuse 1
1 vote
3 replies
3.4K views
Structural Variants (SV) Manta output interpretation
manta vcf
updated by DGTool 30 • | written by aLex97 1
1 vote
2 replies
1.2K views
Understanding how champ.DMP determines the reference group for phenotypes
phenotype champ champ.dmp r
written by Benjamin 1
0 votes
1 reply
1.1K views
Samtools: exclude secondary and supplementary alignments
samtools
updated by Ram 4.5K • | written by Alexandra 0
0 votes
0 replies
592 views
News: Variant Analysis Online Course @ Edinburgh Genomics
variant-analysis online-training
updated by Ram 4.5K • | written by Edinburgh Genomics Training 4
0 votes
3 replies
1.2K views
Variant callers for single cell WGS
variant single-cell wgs
written by Binny 0
0 votes
6 replies
1.5K views
Problem while using Tophat 2.1.0 to search gene fusions
blast tophat
written by Pallondyle 0
0 votes
2 replies
1.1K views
Significant p values with non significant looking figures
pvalue fish microbiomes pcoa
updated by Philipp Bayer 888 • | written by mattescott44 0
0 votes
8 replies
1.9K views
calling super enhancers
ose
written by Oburah 0
1 vote
1 reply
944 views
Best approach for identifying top proteins in a single cluster in single-cell analysis
adt citeseq single-cell seurat
updated by bk11 312 • | written by singAsong 1
0 votes
2 replies
1.2K views
Comparing exposure time points of RNA-seq data of samples exposed to various treatments
transcriptomics time-series
updated by Arby 0 • | written by abba647 1
0 votes
0 replies
607 views
generate consensus sequence for PSMC analysis
bcftools consensus-sequence
updated by Ram 4.5K • | written by asatullayevtemurrr 0
0 votes
2 replies
897 views
Tools for assembling Plasmid Genome
illumina plasmid e.coli assembly
written by adarsh 8
1 vote
4 replies
1.6K views
Poor dispersion fit in DESeq2
deseq2 rna-seq edger limma
updated by Ram 4.5K • | written by Ben 3
0 votes
5 replies
1.5K views
RNASeq Analysis: data from different library
rna-seq ngs
updated by i.sudbery 2.3K • | written by Matteo 0
0 votes
4 replies
1.2K views
R-studio, install, R, Installation error
rstudio offtopic
updated by Michael Dondrup 5.6K • | written by naveennavinbeast 0
1 vote
1 reply
1.0K views
ATAC-Seq Differential Peak Analysis
atac-seq
updated by Ram 4.5K • | written by B.N. 1
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