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2 replies
2.0K views
Forum: A guide for beginners in bioinformatics
sequencing ngs
updated by Ram Ram • written by Varshini • Varshini
0 votes
5 replies
2.2K views
bcftools stats not counting samples
bcftools variant-calling
updated by Pierre Lindenbaum Pierre Lindenbaum • written by alba • alba
8 votes
24 replies
21K views
Tutorial: Associating VDJ clonotyping data with scRNA-seq in Seurat
single-cell rna-seq seurat tcr
updated by garcesj • garcesj • written by jared.andrews07 jared.andrews07
17 votes
8 replies
21K views
Tutorial: Integrating VDJ sequencing data with Seurat
vdj seurat sc-rnaseq clonotyping
updated by GenoMax GenoMax • written by atakanekiz atakanekiz
0 votes
2 replies
1.5K views
WGCNA: Problem with selecting soft threshold below R^2 0.8
r network wgcna
updated by LChart LChart • written by emilymily77 • emilymily77
0 votes
0 replies
992 views
CellTypist Confidence Scores vs SingleR Delta Scores
single-cell singler celltypeannotation celltypist
written by Manuel Sokolov Ravasqueira • Manuel Sokolov Ravasqueira
0 votes
3 replies
1.8K views
How to Perform Differential Expression Analysis Between Two Species' Transcriptomes?
transcriptomics differential-expression genomics
updated by Michael Dondrup Michael Dondrup • written by PALA • PALA
0 votes
0 replies
861 views
News: Course: Introduction to CRISPR
genomeediting crispr evolution
written by Physalia-courses Physalia-courses
0 votes
1 reply
1.2K views
EnhancerAtlas
enhancer hic
updated by LChart LChart • written by sk_24 • sk_24
0 votes
1 reply
844 views
Error in simulation interaction diagram module of Desmond
simulation md
written by 20212854117sakib • 20212854117sakib
0 votes
8 replies
3.2K views
Kallisto: to scaledTPM or not to scaledTPM
tximport kallisto edger rnaseq
updated by Gordon Smyth Gordon Smyth • written by IM • IM
0 votes
2 replies
2.0K views
How to find potential batch effect for microarray samples?
gene-expression batch-effect microarray
written by namck • namck
0 votes
4 replies
1.9K views
CpG coordinates information
methylation human-genome cpg-sites
written by elias01cj • elias01cj
0 votes
0 replies
726 views
Comparative proteomics using online mass spec data
mass-spectrometry proteomics
updated by Ram Ram • written by charlieclark1ee • charlieclark1ee
0 votes
2 replies
1.1K views
Biostar Handbook issue with doctor.py
doctor.py biostar-handbook
updated by Ram Ram • written by popozan • popozan
1 vote
6 replies
2.4K views
Is it necessary to give a "limit" SPARQL Disgenet query search?
disgenet rdf sparql
updated by GenoMax GenoMax • written by alirejwan.stars1994 • alirejwan.stars1994
0 votes
0 replies
684 views
Galaxy docker build
docker galaxy
updated by Ram Ram • written by Lucas • Lucas
0 votes
1 reply
1.2K views
Different insertion times from two methods
pacbio mtdna numts
updated by Ram Ram • written by hashim.rana11 • hashim.rana11
0 votes
6 replies
2.1K views
installing ArchR on a mac
r archr
written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
3 replies
2.0K views
python package for Kendall-Colijn distances between phylogenetic trees
biology genealogy evolution
updated by doorholez • doorholez • written by Hongjin • Hongjin
0 votes
0 replies
692 views
LFQ values from MS counts
ms lfq proteomics mass-spectrometry
updated by Ram Ram • written by sebastian.gregoricchio • sebastian.gregoricchio
0 votes
2 replies
1.3K views
BCFTOOLS VIEW parameter?
snp
updated by Pierre Lindenbaum Pierre Lindenbaum • written by charlie • charlie
0 votes
6 replies
1.9K views
Why do a bacterium need CRISPR system?
crispr genetics
written by Farhat • Farhat
0 votes
2 replies
1.7K views
renv does not activate the environment
environment renv
written by Parham Parham
0 votes
2 replies
2.6K views
Get PDB files from UniProt IDs
protein-structure uniprot pdb proteins
updated by Wayne Wayne • written by dbykov • dbykov
0 votes
7 replies
2.3K views
Chromium 5’ Next GEM single cell STARsolo
10x star scrna-seq
updated by dsull dsull • written by hood821 • hood821
11 votes
9 replies
11K views
Tutorial: STARsolo config for 10x Chromium v1, v2, v3
chromium 10x starsolo star
updated by GenoMax GenoMax • written by Kevin Blighe Kevin Blighe
1 vote
4 replies
49K views
How to convert a URL into a DOI programmatically
pubmed doi url
updated by Janine • Janine • written by entheologist33 • entheologist33
0 votes
1 reply
906 views
Identifying statistically significant clusters between two populations of variable sizes
immune-response flow-cytometry
updated by LChart LChart • written by Stephen • Stephen
0 votes
0 replies
842 views
News: Metabolomics with R/Bioconductor Online Course
metabolomics bioconductor r
updated by Ram Ram • written by Physalia-courses Physalia-courses
1 vote
4 replies
1.5K views
Biostatistics with few samples in seqRNA counts
biostatistics
updated by dariober dariober • written by Lucas • Lucas
0 votes
4 replies
1.4K views
Multiple SRR files correspond to the same GSM in GEO
fastq geo
written by SHIRUI • SHIRUI
0 votes
3 replies
1.5K views
How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-Seq Data? Post:
rna-seq
updated by i.sudbery i.sudbery • written by roxana • roxana
1 vote
6 replies
3.8K views
Snakemake and conda directory structure
management workflow snakemake conda
updated by Michael Dondrup Michael Dondrup • written by hpapoli hpapoli
0 votes
0 replies
533 views
Molecule toxicity prediction
molecule-toxicity off-target
updated by Ram Ram • written by nataliariedelc • nataliariedelc
0 votes
2 replies
1.1K views
SNPs profile on chromosome 1 curve
profile snps
updated by Brian Bushnell Brian Bushnell • written by Nuglozeh • Nuglozeh
0 votes
2 replies
1.6K views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
bioconductor rpackage clusterprofiler
written by iamsmor • iamsmor
1 vote
8 replies
3.9K views
How To Transform A Location-Type Coordinate Into Integer Or String?
biopython
updated by Asan Emirsale • Asan Emirsale • written by Jelena_bioinf • Jelena_bioinf
0 votes
2 replies
1.0K views
Can we treat outliers as batch variables in linear modeling?
r modeling outlier linear
written by aUser • aUser
1 vote
7 replies
2.8K views
Differential expressed genes - much more DE genes for one factor in the additive model than the interaction model . What may be the reason?
deseq2
written by Pei Pei
0 votes
2 replies
963 views
host-specific pathogens taxonomy IDs
taxonomy taxon ncbi host-specific-pathogens
updated by Ram Ram • written by kseniamacias • kseniamacias
0 votes
1 reply
1.2K views
GenBank submission through BankIt
chloroplast genome featurefile genbank bankit
written by a.bibek52 • a.bibek52
0 votes
0 replies
946 views
News: Cellosaurus release 50 is available
database knowledgebase cell-line
updated by Ram Ram • written by Amos Bairoch • Amos Bairoch
1 vote
7 replies
3.3K views
Trying to understand basic DiffBind usage
diffbind chip-seq
written by alejandrocastillaibeas • alejandrocastillaibeas
0 votes
1 reply
836 views
How to draw a Manhattan diagram based on the gene names?
gwas manhattan-plot r
updated by Ram Ram • written by jienting0402 • jienting0402
0 votes
1 reply
927 views
Trying to extract ONLY protein sequences with Augustus
augustus gff sequences protein
updated by dthorbur dthorbur • written by eedeaguiar • eedeaguiar
1 vote
3 replies
1.9K views
Identify SNPs with Fst estimates > 0.9 and annotate them
snpeff fst snp
updated by Pierre Lindenbaum Pierre Lindenbaum • written by anasjamshed anasjamshed
0 votes
0 replies
457 views
Error with KissDE exploreResults()
kissplice kissde
written by david.b.rombaut • david.b.rombaut
0 votes
2 replies
956 views
Different result in same species in jellyfish(genome size estimation)
jellyfish genome size
written by ylkim9 • ylkim9
0 votes
2 replies
1.2K views
ESTIMATE -tidyestimate package- tumour purity
estimate tumour-purity
written by Nona • Nona
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