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Interpreting MA plot - DEG

Hi

How can this gene PALB2 have such a strong p value, and not a very high log fold change, but also has lower end of log2mean expression on the MA plot

MA plot:

MA plot

Volcano plot:

volcano plot

r deg ggplot2

I gave my two cents here: https://support.bioconductor.org/p/9159961/

Please next time when you cross-post (for a good reason) leave a link to the other communiti(es). It's good practice to do so to avoid double effort for multiple users.

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