python package for Kendall-Colijn distances between phylogenetic trees
Dose anyone know if there is a python package for Kendall-Colijn distances between phylogenetic trees? Thanks
• 2,007 views
•
link
updated
by
doorholez •
•
written
by
Hongjin •
•
written
by
Hongjin •
1 answer
I wrote a python script for calculating Kendall-Colijn distance. Maybe it will not help Hongjin, but since this is the first site from Google so I write this answer hoping it will help others in the future. Here is the link: Github link
• 0 views
•
link
written
by
doorholez •
Log in to answer this question.
More posts like this
-
Plot Phylogenetic tree with traits in Biopython
written by Begonia_pavonina •
-
Phylogenetic tree to splits matrix
written by DR •
-
Phylogenetic trees in Plotly
written by jon.winkelman •
-
Python and R libraries for phylogenetic plots
written by flogin
-
Seurat Integrated Analysis (RunMultiCCA)
written by chenmengpin •
-
How to calculate synergy score between two drugs?
written by carlos_marchi
-
Which R packages are fit for calculating distances and make phylogenetic trees from VCF files?
written by rimgubaev
-
Program for searching for a specific partition within a set of phylogenetic trees
written by rwn
-
Robinson-Foulds Distance : Number Of Trees At Distance K From A Fixed Tree
written by manuellafond •
-
Is There Any Tool (Or Script) To Detect Signal Conflict Between Two Phylogenetic Trees?
written by sanchezcavani
ETE3 toolkit can calculate tree distances, though not exactly the one you want.
Thanks! I am using ETE3. Unfortunately it only support unweighted Robinson-Foulds distance. I need weighted Robinson-Foulds distance and Kendall-Colijn distance. ETE3 can not do this. Although I find some R packages meet part of the demanding. But python packages is preferred!