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rimgubaev
rimgubaev
Reputation:
340 (Trusted)
Joined:
8.7 years ago
Last seen:
2.6 years ago
Location:
Russia/Moscow/Skoltech
Latest posts by user
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Answer: Answer: Sample size, GxE GWAS
written by rimgubaev 34
1 vote
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Comment: Comment: Interpretation of results obtained in GWAS analysis using MLMM
written by rimgubaev 34
1 vote
2 replies
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Answer: Answer: Why don't my map files contain cM values?
written by rimgubaev 34
1 vote
0 replies
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Comment: Comment: How to add a individuals IDs to admixture output?
written by rimgubaev 34
1 vote
0 replies
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Answer: Answer: Which SNP callers are suitable for QTL mapping in GBS experiments with low cover
written by rimgubaev 34
2 votes
0 replies
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Answer: Answer: QTL mapping by GBS
written by rimgubaev 34
1 vote
0 replies
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Answer: Answer: GBS SNPs calling
written by rimgubaev 34
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Answer: Answer: Best (GATK compatible) RadSeq/GBS pipeline in 2021
written by rimgubaev 34
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1.1K views
How to formally test the replicate consistency having genotype data?
snp genetic variance replicates vcf consistency
written by rimgubaev 34
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0 replies
1.3K views
Are there tools for SNP remapping (liftover) for non-model organism or ones that do not require chain file?
snp liftover assembly chain file vcf
written by rimgubaev 34
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2 replies
1.9K views
What tools to use for genetic map construction or marker ordering using large SNP datasets?
gbs snp genetic map marker ordering qtl
written by rimgubaev 34
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1 reply
1.5K views
Which SNP callers are suitable for QTL mapping in GBS experiments with low coverage?
snp qtl-mapping gbs snp caller low-coverage
written by rimgubaev 34
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Comment: C: How to calculate number of positions covered by at least 10 times in bam file?
written by rimgubaev 34
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Comment: C: How to calculate number of positions covered by at least 10 times in bam file?
written by rimgubaev 34
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4 replies
1.6K views
How to calculate number of positions covered by at least 10 times in bam file?
coverage bam alignment bedtools awk
updated by ATpoint 9.1K • | written by rimgubaev 34
1 vote
0 replies
1.2K views
How to liftover SNPs between different assemblies from different databases?
snp liftover ensembl ncbi assembly
updated by Biostar 380 • | written by rimgubaev 34
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Comment: C: intersect VCF files
written by rimgubaev 34
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2 replies
1.9K views
How to obtain an annotation for the list of NCBI's Gene ID?
ncbi geneid annotation
written by rimgubaev 34
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5 replies
4.5K views
Tools to filter the heterozygous SNPs with biased allele depth (AD) values in vcf file.
vcf gatk heterozygous snps allele depth ad
updated by Pierre Lindenbaum 17K • | written by rimgubaev 34
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0 replies
48 views
Heterozygous calls (SNPs) problem while working with inbred lines.
snps heterozygous gatk gwas sequencing errors
written by rimgubaev 34
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