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rimgubaev
rimgubaev
Reputation:
340
Joined:
8.5 years ago
Last seen:
2.5 years ago
Location:
Russia/Moscow/Skoltech
Latest posts by user
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Answer: Answer: Sample size, GxE GWAS
written by rimgubaev rimgubaev
1 vote
0 replies
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Comment: Comment: Interpretation of results obtained in GWAS analysis using MLMM
written by rimgubaev rimgubaev
1 vote
2 replies
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Answer: Answer: Why don't my map files contain cM values?
written by rimgubaev rimgubaev
1 vote
0 replies
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Comment: Comment: How to add a individuals IDs to admixture output?
written by rimgubaev rimgubaev
1 vote
0 replies
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Answer: Answer: Which SNP callers are suitable for QTL mapping in GBS experiments with low cover
written by rimgubaev rimgubaev
2 votes
0 replies
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Answer: Answer: QTL mapping by GBS
written by rimgubaev rimgubaev
1 vote
0 replies
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Answer: Answer: GBS SNPs calling
written by rimgubaev rimgubaev
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0 replies
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Answer: Answer: Best (GATK compatible) RadSeq/GBS pipeline in 2021
written by rimgubaev rimgubaev
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1.1K views
How to formally test the replicate consistency having genotype data?
snp genetic variance replicates vcf consistency
written by rimgubaev rimgubaev
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0 replies
1.3K views
Are there tools for SNP remapping (liftover) for non-model organism or ones that do not require chain file?
snp liftover assembly chain file vcf
written by rimgubaev rimgubaev
0 votes
2 replies
1.9K views
What tools to use for genetic map construction or marker ordering using large SNP datasets?
gbs snp genetic map marker ordering qtl
written by rimgubaev rimgubaev
0 votes
1 reply
1.5K views
Which SNP callers are suitable for QTL mapping in GBS experiments with low coverage?
snp qtl-mapping gbs snp caller low-coverage
written by rimgubaev rimgubaev
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0 replies
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Comment: C: How to calculate number of positions covered by at least 10 times in bam file?
written by rimgubaev rimgubaev
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Comment: C: How to calculate number of positions covered by at least 10 times in bam file?
written by rimgubaev rimgubaev
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4 replies
1.6K views
How to calculate number of positions covered by at least 10 times in bam file?
coverage bam alignment bedtools awk
updated by ATpoint ATpoint • written by rimgubaev rimgubaev
1 vote
0 replies
1.2K views
How to liftover SNPs between different assemblies from different databases?
snp liftover ensembl ncbi assembly
updated by Biostar Biostar • written by rimgubaev rimgubaev
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0 replies
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Comment: C: intersect VCF files
written by rimgubaev rimgubaev
0 votes
2 replies
1.9K views
How to obtain an annotation for the list of NCBI's Gene ID?
ncbi geneid annotation
written by rimgubaev rimgubaev
0 votes
5 replies
4.4K views
Tools to filter the heterozygous SNPs with biased allele depth (AD) values in vcf file.
vcf gatk heterozygous snps allele depth ad
updated by Pierre Lindenbaum Pierre Lindenbaum • written by rimgubaev rimgubaev
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0 replies
44 views
Heterozygous calls (SNPs) problem while working with inbred lines.
snps heterozygous gatk gwas sequencing errors
written by rimgubaev rimgubaev
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