I believe ape and phangorn for R both have plotting functionality. For python, the same goes for dendropy and ete3, though all of these packages are more about analysis than plotting. I think matplotlib for python has various tree viz options too.
I'm trying to import a nexus tree (from BEAST) as a phylo object with node information (I'm specifically interested in the "posterior" values). The methods …
Hey guys Why would species tree of the same species constructed with different software programmes be different. I constructed a species using PhyloT with NCBI …
Hi, Does anyone have any experience generating phylogenetic trees using Plotly with python? I already have the newick files for the trees and can process …
Hey guys, I'm trying to download all genomes of Eimeria, present on NCBI. So, as usually, I wrote this line: wget -r --accept-regex ".*_genomic.fna.gz" "ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/protozoa/Eimeria*" …
I'm using python 3.6 and I have utilized biopython package `(https://biopython.org/)` for drwaing phylogenetic tree with a newick format tree file. I want to calculate …
## ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data The `ggtree` package extending the `ggplot2` …
I believe ape and phangorn for R both have plotting functionality. For python, the same goes for dendropy and ete3, though all of these packages are more about analysis than plotting. I think matplotlib for python has various tree viz options too.