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0 votes
1 reply
2.1K views
Chemistry Detection Error in CellRanger for Single-Cell RNA-Seq Data
cellranger single-cell rna
updated by GenoMax 16K • | written by 97sun3 1
0 votes
3 replies
1.4K views
DEseq2 with different designs matrix
deseq2
written by QX 9
0 votes
0 replies
760 views
somatic SV calling with bionano optical mapping data
om sv bionano alignment variants
written by eebloom 11
0 votes
3 replies
1.8K views
I think batch correction didn't working in my dataset(ft. RunHarmony)
scrnaseq
written by kayah 2
0 votes
2 replies
1.2K views
Enhanced Volcano not working on ANY data. Coerces everything to NaN
bioconductor enhancedvolcano
updated by Ram 4.5K • | written by Alex 0
0 votes
0 replies
655 views
Downstream analysis for CIBERSORTx imputed cell-specific gene expression
cibersortx
updated by Ram 4.5K • | written by Fred Lawrence 0
0 votes
3 replies
1.6K views
How to represent arbitrarily length kmer?
kmer
written by dwpeng 14
0 votes
1 reply
865 views
Shift in GC content between forward and reverse reads in ddRADseq data
ddrad sequencing fastqc ddradseq
updated by GenoMax 16K • | written by Lemonhope 1
0 votes
5 replies
2.2K views
No such variable: nextflow
nextflow
updated by Medhat 981 • | written by Mmar 0
0 votes
1 reply
1.5K views
Correct VCF header
vcf
updated by Ram 4.5K • | written by ja569116 0
0 votes
1 reply
894 views
Need help to figure out what format this SNP calling data is.
snp microarray
updated by GenoMax 16K • | written by yihangzhu 0
0 votes
11 replies
2.7K views
Differential gene expression
deseq2 differential gene expression
updated by OmnibusX 13 • | written by 4732b159 0
0 votes
4 replies
2.3K views
Microbial pathway analysis tool or pipeline
pathways 16srrna microbiome
written by ssko 2
0 votes
0 replies
651 views
Different SNPs found: WGS aligned to WES
wes alignment wgs
written by ramiro.barrantes 6
0 votes
1 reply
1.6K views
Updating phenotype column for .ped .fam files (PLINK --pheno not working)
phenotype plink --pheno gwas binary
updated by bk11 312 • | written by sabrilo171 2
0 votes
0 replies
597 views
Handling FILTER Fields in VCF Metadata and Body
vcf
written by ManuelDB 11
0 votes
0 replies
885 views
DESeq2 Install in Jupyter Notebook
deseq2 jupyter
updated by Ram 4.5K • | written by Lolo 0
0 votes
1 reply
964 views
Controlling for Baseline Taxa Relative Abundance [Longitudinal 16S rRNA Sequencing Data]
qiime 16srrna sequencing ancombc-2
written by bjeremy 0
0 votes
2 replies
1.3K views
Using findmarker of seurat with different test.use but getting the same resulat.
seurat
updated by bk11 312 • | written by Sep 0
0 votes
7 replies
4.2K views
Core_nt database not available to download?
blast ncbi
updated by GenoMax 16K • | written by DNAngel 26
0 votes
0 replies
743 views
News: Course in Italy: Introduction to Statistics in R (30 September to 3 October 2024)
r glm statistics glmm
written by Physalia-courses 281
1 vote
3 replies
1.5K views
Rapid K-mer search
search k-mer
updated by shenwei356 870 • | written by Anjan 85
0 votes
2 replies
1.1K views
Restrictive alignment with minimap2
nanopore alignment minimap2
written by njornet 2
0 votes
1 reply
958 views
TPM normalization of counts
tpm featurecounts
written by Bushra Bibi 8
0 votes
4 replies
1.7K views
Nr Database just for Prokaryotes
nr database
updated by GenoMax 16K • | written by echolley 2
0 votes
0 replies
562 views
I encounter a problem while checking my MaGeck results.
mageck
written by Pallondyle 0
0 votes
7 replies
2.5K views
How to check coverage in bam file?
bam
updated by cmdcolin 448 • | written by shinyjj 7
0 votes
0 replies
576 views
DiffBind for MBD-seq
diffbind mbd-seq
written by mariannapauletto 9
0 votes
2 replies
1.1K views
Germline and somatic SNPs in same or different allele
germline vcf phasing somatic
written by Nacho del Valle 0
0 votes
5 replies
2.0K views
Extracting human exome from GTF file
gtf human exons
updated by Istvan Albert 10K • | written by Eugenio 0
0 votes
0 replies
564 views
AlphaFold3 molecular docking
alphafold3 ligand moleculardocking
written by iamsmor 0
0 votes
4 replies
3.3K views
Is it Necessary to Use Raw Data for SCTransform When Regressing Out Cell Cycle Genes?
sctransform
written by Kimaya 0
0 votes
6 replies
1.9K views
Batch correction preserving biological difference
scrna-seq batch-correction
written by noodlejackson 4
0 votes
2 replies
1.5K views
Analyzing RNA-seq data with Salmon
quantifying rnaseq data countmatrix salmon
written by Eduardo Oñate 0
0 votes
1 reply
790 views
Opposite REF and ALT alleles
reference-allele eqtl alternative-allele gwas
updated by Ram 4.5K • | written by a.papadam 0
0 votes
0 replies
561 views
(metagenomic) Bins exceeding genome in length
binning metagenomic
written by alenew.am 1
0 votes
0 replies
927 views
News: Online course - Shotgun Metagenomics: Processing and Analysis
prokka metaphlan metagenomics strainphlan panphlan
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
6 replies
5.0K views
Downloading paired end fastq data from SRA
sra single-cell rna-seq
written by Matheus 0
0 votes
3 replies
1.1K views
Find the CDS region of the gene we are interested in in multiple unannotated genomes
genome cds bioinformation
updated by GenoMax 16K • | written by 雨 2
0 votes
0 replies
669 views
Functional normalization using minfi::preprocessFunnorm and control PCs in later analyses
normalization ewas epigenome preprocessing
updated by Ram 4.5K • | written by mendopsy 0
0 votes
0 replies
520 views
Package to design fragment tiling library
protein
written by ar_nabbi 0
0 votes
4 replies
3.8K views
How to understand differences in duplication rates between picard MarkDuplicates and fastp
duplication-rate rna-seq fastp picard
written by Assa Yeroslaviz 197
0 votes
5 replies
1.8K views
Compatibility of IonTorrent BAM Files for HRD Analysis with nf-core/oncoanalyser
nf-core hrd iontorrentplatform ngs oncoanalyser
written by Nour-eddine 7
0 votes
0 replies
934 views
Job: Freelance Expert in Human Skin Microbiome
multiomics skin-microbiome metagenomics microbiota
updated by Ram 4.5K • | written by Simon 0
1 vote
6 replies
2.1K views
Python for pdf reports
cancer python3 reports
updated by JustinZhang 14 • | written by prs 2
0 votes
0 replies
544 views
Different position for same gene using annotatePeak from ChIPseeker
chipseeker atacseq
written by QX 9
0 votes
0 replies
544 views
plotHeatmap from deeptools explain
atac-seq
written by QX 9
1 vote
4 replies
8.8K views
Kraken2 with Nanopore reads
kraken2 nanopore kraken
updated by ChillarAnand 8 • | written by predeus 212
0 votes
1 reply
1.1K views
Using Ensembl Gene IDs for Ontology Analysis
david ensembl reactome ontology-analysis
updated by LChart 518 • | written by saamhasan55 3
1 vote
1 reply
2.4K views
AlphaFold 3 - how to check MSA depth?
modeling protein interaction alphafold
updated by dthorbur 350 • | written by GLG 1
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