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0
votes
1
reply
224
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Network Alignment
plugin
Cytoscape
CytoMCS
updated 9 days ago by
Scooter
▴ 280 • written 10 days ago by
Akash D
▴ 40
1
vote
2
replies
473
views
ComBat-seq problem
ComBat-seq
RNA-Seq
batch-effect
updated 5 months ago by
Ram
43k • written 5 months ago by
Akash D
▴ 40
0
votes
0
replies
960
views
Comment:
Comment: Meta transcriptomics without test/control samples.
18 months ago by
Akash D
▴ 40
0
votes
0
replies
960
views
Comment:
Comment: Meta transcriptomics without test/control samples.
18 months ago by
Akash D
▴ 40
0
votes
0
replies
960
views
Comment:
Comment: Meta transcriptomics without test/control samples.
18 months ago by
Akash D
▴ 40
0
votes
4
replies
960
views
Meta transcriptomics without test/control samples.
META
TRANSCRIPTOMICS
RNA-Seq
18 months ago by
Akash D
▴ 40
0
votes
2
replies
360
views
Transcript Abundances Meta-transcriptome
Transcript
Meta-transcriptome
Abundances
RNA-Seq
written 18 months ago by
Akash D
▴ 40
0
votes
0
replies
332
views
LINKING OMICS/SYSTEMS BIOLOGY
SYSTEMS
OMICS
TRANSCRIPTOMICS
GENOMICS
BIOLOGY
PROTEOMICS
19 months ago by
Akash D
▴ 40
2
votes
3
replies
699
views
PAN GENOME versus REFERENCE GENOME
PAN
GENOME
ALIGNMENT
updated 20 months ago by
andres.firrincieli
3.6k • written 20 months ago by
Akash D
▴ 40
5
votes
7
replies
1.4k
views
6 follow
Pathway Enrichment
KEGG
ORA
ENRICHMENT
PATHWAY
updated 23 months ago by
GenoMax
142k • written 23 months ago by
Akash D
▴ 40
0
votes
0
replies
1.4k
views
Comment:
Comment: Pathway Enrichment
23 months ago by
Akash D
▴ 40
0
votes
0
replies
1.4k
views
Comment:
Comment: Pathway Enrichment
updated 23 months ago by
GenoMax
142k • written 23 months ago by
Akash D
▴ 40
0
votes
0
replies
687
views
Comment:
Comment: TRANSCRIPTINAL REGULATORY NETWORK MODULES
23 months ago by
Akash D
▴ 40
0
votes
1
reply
687
views
Comment:
Comment: TRANSCRIPTINAL REGULATORY NETWORK MODULES
23 months ago by
Akash D
▴ 40
0
votes
4
replies
687
views
TRANSCRIPTINAL REGULATORY NETWORK MODULES
REGULATORY
MODULES
RNA-SEQ
TRANSCRIPTINAL
NETWORK
23 months ago by
Akash D
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
2.3 years ago by
Akash D
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
2.3 years ago by
Akash D
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
2.3 years ago by
Akash D
▴ 40
1
vote
6
replies
1.1k
views
GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
KEGG
RNA-Seq
GO
2.3 years ago by
Akash D
▴ 40
0
votes
1
reply
516
views
find gene belongs to which pathway
Signal
Crosstalk
DEG
Pathway
updated 2.3 years ago by
cpad0112
21k • written 2.3 years ago by
Akash D
▴ 40
0
votes
0
replies
434
views
What does 'Topological Rewiring' in Regulatory Network Analysis actually mean?
Networks
RNA-Seq
Regulatory
2.3 years ago by
Akash D
▴ 40
0
votes
0
replies
1.5k
views
Comment:
Comment: what are Differentially Expressed Genes?
2.3 years ago by
Akash D
▴ 40
0
votes
1
reply
574
views
Biological Process V/S Biological Pathway?
RNA-seq
KEGG
GSEA
GO
updated 2.4 years ago by
hakimbazol
▴ 20 • written 2.4 years ago by
Akash D
▴ 40
8
votes
6
replies
1.5k
views
what are Differentially Expressed Genes?
Genes
Differentially
Expressed
RNA-Seq
Gene
regulation
2.3 years ago by
Akash D
▴ 40
0
votes
0
replies
1.5k
views
Comment:
Comment: what are Differentially Expressed Genes?
2.4 years ago by
Akash D
▴ 40
0
votes
0
replies
466
views
Find Log2FC values from qPCR data
values
Log2FC
RNA-Seq
CT
qPCR
2.4 years ago by
Akash D
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: LOG2FCs representation
2.4 years ago by
Akash D
▴ 40
2
votes
2
replies
1.1k
views
LOG2FCs representation
LOG2FC
DESeq2
PCR
updated 11 months ago by
Ram
43k • written 2.4 years ago by
Akash D
▴ 40
0
votes
0
replies
777
views
Comment:
Comment: Fellowship
2.4 years ago by
Akash D
▴ 40
0
votes
2
replies
777
views
Looking for research fellowships in PhD
Fellowship
PhD
Project
updated 2.4 years ago by
cpad0112
21k • written 2.4 years ago by
Akash D
▴ 40
0
votes
0
replies
1.4k
views
Comment:
Comment: RNA-Seq and qPCR
2.5 years ago by
Akash D
▴ 40
1
vote
1
reply
1.4k
views
Comment:
Comment: RNA-Seq and qPCR
2.5 years ago by
Akash D
▴ 40
9
votes
6
replies
1.4k
views
RNA-Seq and qPCR
trends
RNA-Seq
qPCR-
and
correlation
2.5 years ago by
Akash D
▴ 40
0
votes
1
reply
1.4k
views
Answer:
Answer: RNA-Seq and qPCR
2.5 years ago by
Akash D
▴ 40
0
votes
0
replies
481
views
Different no of 'unknown/class u' transcripts in merged.gtf and final.gtf files
Cufflinks
StringTie
GffCompare
RNA-Seq
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
708
views
extract transcripts with particular class code in Cuff/GffCompare
GffCompare
Class
CuffCompare
code
RNA-Seq
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
1.6k
views
Class code selection ; GffCompare ; Novel transcript
codes
GffCompare
Class
RNA-Seq
StringTie
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
613
views
trmap alternative for gffcompare?
GffCompare
Novel-Transcripts
StringTie
RNA-Seq
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
714
views
Novel transcript class code GffCompare?
Novel-Transcripts
GffCompare
RNA-Seq
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
2.2k
views
Comment:
Comment: Download and install StringTie
2.9 years ago by
Akash D
▴ 40
1
vote
3
replies
2.2k
views
Download and install StringTie
StringTie
RNA-Seq
updated 2.9 years ago by
GenoMax
142k • written 2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
1.6k
views
Comment:
Comment: Genome annotation file GFF3 and GTF same? interchangeable?
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
5.5k
views
Comment:
Comment: human genome toplevel files
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
2.8k
views
Comment:
Comment: Reference Genome dna, rm or sm??
2.9 years ago by
Akash D
▴ 40
1
vote
2
replies
739
views
Cytoscape JSON file format and STYLE storage
Cytoscape
Styles
JSON
updated 13 months ago by
Ram
43k • written 2.9 years ago by
Akash D
▴ 40
2
votes
2
replies
2.8k
views
Reference Genome dna, rm or sm??
unmaksed
Reference
masked
genome
2.9 years ago by
Akash D
▴ 40
6
votes
4
replies
1.6k
views
Genome annotation file GFF3 and GTF same? interchangeable?
GTF
GFF3
NGS
ANNOTATION
2.9 years ago by
Akash D
▴ 40
0
votes
0
replies
2.4k
views
Comment:
Comment: StringTie FPKM output to DESeq2 input
2.9 years ago by
Akash D
▴ 40
3
votes
6
replies
2.4k
views
StringTie FPKM output to DESeq2 input
Cufflinks
DESeq2
RNA-Seq
StringTie
updated 20 months ago by
mgranada3
▴ 30 • written 2.9 years ago by
Akash D
▴ 40
0
votes
1
reply
2.4k
views
Comment:
Comment: StringTie FPKM output to DESeq2 input
2.9 years ago by
Akash D
▴ 40
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