Different no of 'unknown/class u' transcripts in merged.gtf and final.gtf files
Hello!
1.Can anyone explain why the no of 'unknown/class u' transcripts in merged.gtf and final.gtf files/sample are not same?
2.Does that mean that final.gtf files are itself a subset of merged.gtf ?
3.If i take a union of all tmap files {made from final.gtfs} + remove duplicates, I will end up with same number of transctips as reported by tmap file {made from merged.gtf}?
Any help please?
Thank you Akash
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