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Download and install StringTie

I have SOURCE PACKAGE:

  1. Downloaded StringTie source package http://ccb.jhu.edu/software/stringtie/dl/stringtie-2.1.5.tar.gz
  2. tar zxvf stringtie-2.1.5.tar.gz
  3. cd stringtie-2.1.5
  4. make release

Alternatively I also tried with BINARY PACKAGE

BINARY PACKAGE: I have also tried with the Binary package. When i execute './stringtie' it does show me everything about StringTie.

Using either of the ways and the trying to run StringTie commands on my .Bam files. my terminal reports 'stringtie: command not found'

Isn't my stringtie installed? am I missing something in between?

Please Help..

Tks Akash

stringtie rna-seq
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updated by GenoMax GenoMax • written by SKY • SKY

2 answers

my terminal reports 'stringtie: command not found'

Classic $PATH problem. Add directory containing stringtie to your $PATH using the directions here.

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written by GenoMax GenoMax

With love Akash

Working!:-)

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written by SKY • SKY

Use conda to manage software pacpages

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written by grant.hovhannisyan grant.hovhannisyan

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