Reference Genome dna, rm or sm??
I found three types of Toplevel genome i.e dna, rm and sm. By now I know the difference but which to use for your for RNA-Seq analysis?
Any help would be appreciated
Thank you Akash
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See Why is human genome FASTA file on GENCODE much smaller than that on ENSEMBL?
Use primary unmasked genome. Do not use Toplevel file.
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