extract transcripts with particular class code in Cuff/GffCompare
I want to make a new file called class_code.gtf file[containing only transcripts and related information but for a particular class code only] from annotated.gtf [which is an output of GffCompare and containing transcripts with all class codes].
How can I do it?
Please help, I am stuck
Thank you Akash
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Expression analysis of LncRNA from RNA-seq data
written by Bushra Bibi
-
TRANSCRIPTINAL REGULATORY NETWORK MODULES
written by SKY •
-
SKAT burden analysis in R
written by afergused •
-
Different no of 'unknown/class u' transcripts in merged.gtf and final.gtf files
written by SKY •
-
Class code selection ; GffCompare ; Novel transcript
written by SKY •
-
trmap alternative for gffcompare?
written by SKY •
-
Novel transcript class code GffCompare?
written by SKY •
-
Error: cannot find file 'stringtieout/ film_01.transcripts.gtf' and assemblies.txt does not look li…
written by ccelispuga •
-
NA for gff compare class code
written by samuel
-
Extract transcript from genome guided assembly based on class code using gffread
written by Bioinfonext
