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412 results • Page
2 of 9
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Views
Votes
Replies
76
votes
14
replies
16k
views
15 follow
Tutorial:
List Of Bioinformatics Books
books
updated 15 months ago by
Ram
44k • written 11.0 years ago by
Medhat
9.7k
20
votes
14
replies
4.1k
views
Tutorial:
Video-tutorials: How to get started using EaSeq for interactive ChIP-seq data visualization and exploration (Windows)
ChIP-Seq
visualization
Windows
EaSeq
updated 13 months ago by
Ram
44k • written 8.0 years ago by
Mads Lerdrup
▴ 460
9
votes
14
replies
3.8k
views
6 follow
Tutorial:
Install required dependencies for GATK4 on remote server without root privilege
gatk
updated 19 months ago by
Angelina_G
▴ 10 • written 2.2 years ago by
thehung92phuyen
▴ 40
55
votes
14
replies
94k
views
10 follow
Tutorial:
Using R in Conda
R
updated 14 months ago by
Ram
44k • written 3.9 years ago by
rohitsatyam102
▴ 870
30
votes
14
replies
16k
views
8 follow
Tutorial:
Installation of the MuSiC suite on unsupported Linux distributions
genome-music
linux
smg
updated 15 months ago by
Ram
44k • written 11.3 years ago by
Cyriac Kandoth
6.1k
18
votes
13
replies
2.2k
views
Tutorial:
Screen shots of text (please don't)!
meta
updated 12 months ago by
Ram
44k • written 7.2 years ago by
Michael
54k
75
votes
13
replies
67k
views
10 follow
Tutorial:
Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r
cancer
classification
updated 19 months ago by
Ram
44k • written 10.5 years ago by
Nicholas Spies
★ 1.2k
5
votes
13
replies
2.2k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 5 weeks ago by
ATpoint
82k • written 5 weeks ago by
BioinfGuru
★ 1.7k
77
votes
13
replies
16k
views
12 follow
Tutorial:
Exploring cancer mutation data portals
TCGA
Cancer
ICGC
Data-Portal
Mutation
updated 2.6 years ago by
Ram
44k • written 10.0 years ago by
Malachi Griffith
20k
64
votes
13
replies
13k
views
11 follow
Tutorial:
Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practices.
muTect
GATK
Picard
Exome
updated 2.3 years ago by
Ram
44k • written 9.6 years ago by
Chirag Nepal
★ 2.4k
46
votes
13
replies
15k
views
13 follow
Tutorial:
Methylation Analysis Tutorial in R - Part 1
R
cancer
methylation
updated 10 weeks ago by
Konstantinos
• 0 • written 3.6 years ago by
Hamid Ghaedi
3.2k
23
votes
13
replies
11k
views
11 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
ascp
aspera
updated 6 months ago by
jude
• 0 • written 23 months ago by
ATpoint
82k
7
votes
13
replies
13k
views
Tutorial:
Merging multiple vcf files into Single vcf file
vcf
bcftools
updated 11 months ago by
Ram
44k • written 5.3 years ago by
jaybee
▴ 170
35
votes
13
replies
14k
views
9 follow
Tutorial:
How to get FASTQ reads from the Short Read Archive (SRA)
fastq
sra
updated 2.3 years ago by
liorglic
★ 1.4k • written 2.6 years ago by
Istvan Albert
100k
34
votes
12
replies
30k
views
7 follow
Tutorial:
So What Does The Sequence Duplication Rate Really Mean In A Fastqc Report
quality-control
fastqc
updated 15 months ago by
Ram
44k • written 10.6 years ago by
Istvan Albert
100k
8
votes
12
replies
6.8k
views
Tutorial:
Create your own VPN to access work resources from home
tinyproxy
OpenVPN
VPN
updated 13 months ago by
Ram
44k • written 8.0 years ago by
John
13k
6
votes
11
replies
5.7k
views
6 follow
Tutorial:
Add count numbers to headers in a fasta file
genome
updated 15 months ago by
Ram
44k • written 7.5 years ago by
wu.zhiqiang.1020
▴ 50
16
votes
11
replies
14k
views
7 follow
Tutorial:
retrieve full TCGA datasets from cBioportal with R
TCGA
RNA-seq
data-retrieval
cBioportal
R
updated 14 months ago by
Ram
44k • written 7.6 years ago by
TriS
★ 4.7k
12
votes
11
replies
7.6k
views
Tutorial:
How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
NCBI
Bioproject
SRA
BioSample
updated 12 months ago by
Ram
44k • written 7.2 years ago by
CandiceChuDVM
★ 2.5k
16
votes
11
replies
8.4k
views
Tutorial:
How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta
how-to
documentation
14 months ago by
Ram
44k
22
votes
10
replies
7.2k
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
tidyverse
gene
R
updated 14 months ago by
Ram
44k • written 3.7 years ago by
rpolicastro
13k
6
votes
10
replies
5.3k
views
Tutorial:
Differentially methylated regions: Easy & Fast Identification and ANnoTation
DMR
dna-methylation
updated 14 months ago by
Ram
44k • written 6.3 years ago by
dec986
▴ 380
30
votes
10
replies
83k
views
9 follow
Tutorial:
Installing an updated R version (>=4.0) using conda
software-error
R
updated 14 months ago by
Ram
44k • written 3.2 years ago by
Nitin Narwade
★ 1.6k
16
votes
9
replies
7.2k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
TCGA
GDC
DESeq2
updated 23 months ago by
dk0319
▴ 70 • written 2.5 years ago by
Barry Digby
★ 1.3k
40
votes
9
replies
11k
views
10 follow
Tutorial:
Resources for flow cytometry bioinformatics
single-cell
flow-cytometry
updated 14 months ago by
Ram
44k • written 10.1 years ago by
Ahill
★ 2.0k
21
votes
9
replies
6.6k
views
8 follow
Tutorial:
Interactive Perl Learning
perl
updated 15 months ago by
Ram
44k • written 11.0 years ago by
Medhat
9.7k
8
votes
9
replies
11k
views
Tutorial:
Extracting subset of records from FASTA/FASTQ files based on exact/pattern matches of IDs (ONE-LINERS)
fastq
fasta
updated 14 months ago by
Ram
44k • written 10.1 years ago by
umer.zeeshan.ijaz
★ 1.8k
9
votes
9
replies
4.2k
views
Tutorial:
Determine % of reference genome covered by aligned SAM/BAM
reference-coverage
ngs
updated 12 months ago by
Ram
44k • written 6.7 years ago by
Kevin Blighe
88k
66
votes
9
replies
49k
views
7 follow
Tutorial:
Reference Assembly - Mapping Reads To A Reference Genome
reference
samtools
mapping
bwa
updated 15 months ago by
Ram
44k • written 10.9 years ago by
Joseph Hughes
★ 3.0k
23
votes
8
replies
5.4k
views
Tutorial:
A Practical (And Opinionated) Guide To Analyzing Human Methylation 450K Data
450K
methylation
updated 2.4 years ago by
Ram
44k • written 9.8 years ago by
brentp
24k
7
votes
8
replies
3.4k
views
Tutorial:
Determine if a transcription factor is bound with CENTIPEDE
ChIP-Seq
transcription-factor
DNase-Seq
CENTIPEDE
updated 17 months ago by
Ram
44k • written 8.9 years ago by
Kamil
★ 2.3k
31
votes
8
replies
11k
views
7 follow
Tutorial:
How To Create A Bioinformatics Pipeline Using Spotify !
python
pipeline
updated 14 months ago by
Ram
44k • written 10.1 years ago by
Rad
▴ 810
81
votes
8
replies
8.6k
views
6 follow
Tutorial:
Current Topics in Genome Analysis 2014 (collection of educational lectures)
workshop
lectures
genomics
training
updated 14 months ago by
Ram
44k • written 10.0 years ago by
Malachi Griffith
20k
99
votes
8
replies
29k
views
8 follow
Tutorial:
Guide to TCGA data
cancer
RNA-Seq
clinical
TCGA
updated 13 months ago by
Ram
44k • written 8.2 years ago by
Jordan Anaya
★ 1.1k
16
votes
7
replies
16k
views
Tutorial:
Integrating VDJ sequencing data with Seurat
VDJ
Seurat
sc-RNAseq
clonotyping
updated 14 months ago by
Ram
44k • written 5.0 years ago by
atakanekiz
▴ 310
50
votes
7
replies
11k
views
7 follow
Tutorial:
Genome Assembly Review Papers
assembly
papers
updated 15 months ago by
Ram
44k • written 11.7 years ago by
Istvan Albert
100k
19
votes
7
replies
6.7k
views
Tutorial:
scRNA-seq CITE-seq-count bioinformatics
CITE-seq-count
scRNA-seq
RNA-Seq
updated 10 months ago by
ATpoint
82k • written 4.2 years ago by
colindaven
6.4k
8
votes
7
replies
8.4k
views
Tutorial:
Getting Cegma/Genewise To Work On Centos, Rhel
centos
genewise
rhel
cegma
updated 2.3 years ago by
Ram
44k • written 10.5 years ago by
Adrian Pelin
★ 2.6k
20
votes
7
replies
6.4k
views
Tutorial:
Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2
RNA-Seq
R
updated 14 months ago by
Ram
44k • written 5.6 years ago by
ahmad mousavi
▴ 800
11
votes
7
replies
12k
views
Tutorial:
ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
clusterProfiler
Software
rna-seq
updated 12 months ago by
Ram
44k • written 3.2 years ago by
Novogene
▴ 420
13
votes
7
replies
6.3k
views
Tutorial:
STARsolo config for 10x Chromium v1, v2, v3
Chromium
10x
STARsolo
STAR
updated 14 months ago by
Ram
44k • written 3.7 years ago by
Kevin Blighe
88k
12
votes
7
replies
2.3k
views
Tutorial:
Sequence Alignment from Scratch with BWA
alignment
bwa
DNA
14 months ago by
barslmn
★ 2.2k
15
votes
7
replies
6.5k
views
Tutorial:
Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
ChIP-Seq
peaks
R
HOMER
updated 14 months ago by
Ram
44k • written 8.0 years ago by
steve
★ 3.5k
11
votes
7
replies
14k
views
Tutorial:
Removing rows with duplicate values based on 1 or more key values - linux awk
awk
linux
bash
updated 12 months ago by
Ram
44k • written 6.7 years ago by
Kevin Blighe
88k
2
votes
6
replies
3.2k
views
Tutorial:
Rembrandt Glioma Data Analysis (PART I) - Are Gender specific genes related to cancer ?
gene
R
Rembrandt
updated 13 months ago by
Ram
44k • written 7.9 years ago by
majuang66
▴ 140
16
votes
6
replies
6.5k
views
Tutorial:
How to make your snakefiles self-documenting
snakemake
updated 13 months ago by
Ram
44k • written 7.6 years ago by
Botond Sipos
★ 1.7k
43
votes
6
replies
12k
views
Tutorial:
Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
ensembl
maf
tcga
vcf
updated 15 months ago by
Ram
44k • written 10.3 years ago by
Cyriac Kandoth
6.1k
46
votes
6
replies
25k
views
Tutorial:
Greatly speed up conda by using mamba
software
updated 2.3 years ago by
cameron.cowan
▴ 50 • written 3.2 years ago by
rpolicastro
13k
61
votes
6
replies
9.6k
views
Tutorial:
Minimum Standards For Bioinformatics Command Line Tools
command-line
updated 15 months ago by
Ram
44k • written 10.8 years ago by
Medhat
9.7k
30
votes
6
replies
22k
views
Tutorial:
Transforming And Manipulating Color Space Reads
conversion
solid
updated 20 months ago by
Ram
44k • written 12.1 years ago by
Istvan Albert
100k
412 results • Page
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Comment: samtools write-index
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• 0
Oh God, thank you so much for helping me in both platforms! I am gonna upgrade my samtools to stay tracked with you and your team! Thank yo…
Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
jared.andrews07
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Go back to your original counts matrix or input data and assign consistent IDs during its generation.
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jared.andrews07
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A few things. >(1)What did i do wrong here? SingleR will annotate each cell with whatever it's most similar to in the reference datas…
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Couldn't tell you, I avoid Seurat like the plague.
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Picasa
▴ 640
Same. did you get any solution ?
Comment: Setting a threshold on gene expression for subsetting (scRNA-seq)
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4.2k
Generally, I cannot advise this in the abstract. The thing is, depending on the treatment group and so forth, there are some transcripts th…
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A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
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Thank you for your response! Interesting paper.
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@jaredandrews07 If I integrate using Donor: ```R RunHarmony(seu_obj, group.by.vars = c("Donor_ID")) ``` Should I also normalize my data…
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QX
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thank you so much!
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hello everyone, I got the same error for a function immuCellAI_new; result <- ImmuCellAI_new(countData = expr_data_log22, data_type =…
Comment: Merging multiple samples in Seurat
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did you split by sample or donor ?
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Bastien Hervé
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That is correct
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