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brentp
brentp
Role:
Moderator (
Reputation:
23,830 (Trusted)
Joined:
16.6 years ago
Last seen:
5.1 years ago
Location:
Utrecht, The Netherlands
Google Scholar:
tDf0VkUAAAAJ
Twitter:
brent_p

Working on bionformatics at the de Ridder Lab at the University of Utrecht.

my code on github

Latest posts by user
6 votes
2 replies
3.8K views
How to run vg giraffe for sv genotyping?
vg
updated by Jouni SirĂ©n 85 • | written by brentp 2.4K
1 vote
0 replies
0 views
Comment: C: vcfanno quickly annotate a vcf with other VCFs, BEDs, BAMs
written by brentp 2.4K
2 votes
1 reply
0 views
Answer: A: Obtaining list of / specifying interrogation sites in Peddy
written by brentp 2.4K
0 votes
0 replies
0 views
Comment: C: mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
written by brentp 2.4K
0 votes
1 reply
0 views
Comment: C: mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
written by brentp 2.4K
0 votes
0 replies
0 views
Comment: C: mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
written by brentp 2.4K
6 votes
6 replies
7.8K views
Tool: mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
depth-of-coverage exome wgs
updated by Ram 4.5K • | written by brentp 2.4K
3 votes
0 replies
0 views
Comment: C: Biallelic inactivation detection
written by brentp 2.4K
1 vote
0 replies
0 views
Comment: C: Detection of CNVs from vcf file
written by brentp 2.4K
10 votes
1 reply
0 views
Answer: A: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 201
written by brentp 2.4K
1 vote
0 replies
0 views
Answer: A: How relevant, valuable, and important is Information Visualization nowadays in B
written by brentp 2.4K
3 votes
0 replies
0 views
Answer: A: Principal Component Analysis using SNP data ste
written by brentp 2.4K
0 votes
1 reply
2 views
Comment: C: Help with understanding CNVkit output
updated by Ram 4.5K • | written by brentp 2.4K
15 votes
1 reply
1 view
Answer: A: What is the reason for most software errors in Bioinformatics according to you?
written by brentp 2.4K
0 votes
1 reply
1 view
Comment: C: Black color reads in IGV: bwa-meth
written by brentp 2.4K
16 votes
2 replies
7.6K views
Tool: vcfanno quickly annotate a vcf with other VCFs, BEDs, BAMs
vcf variant-annotation
updated by Ram 4.5K • | written by brentp 2.4K
1 vote
0 replies
1 view
Comment: Comment: The new era of bioinformatics: simple and fast tools, fewer and more informative
updated by Ram 4.5K • | written by brentp 2.4K
0 votes
0 replies
0 views
Answer: A: sam/bam file handling -> new tools?
written by brentp 2.4K
3 votes
1 reply
0 views
Comment: C: When should you use SVA vs. ComBat?
updated by Ram 4.5K • | written by brentp 2.4K
0 votes
0 replies
0 views
Answer: A: SOLiD mapping with SHRiMP for genome with two different haplotype
written by brentp 2.4K
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