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377 results • Page
2 of 8
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Rank
Views
Votes
Replies
0
votes
0
replies
109
views
lncRNA
tcga
lncrna
3 days ago by
jain72744
▴ 10
1
vote
2
replies
355
views
How to remove multiple batch effects from RNA-seq data before limma differential gene expression analysis?
ComBat-seq
limma
RNA-seq
removeBatchEffect
batch-effect
updated 3 days ago by
Ram
43k • written 4 days ago by
t.fortunato.asquini
• 0
0
votes
2
replies
206
views
Output file of samtools flagstat empty
samtools-flagstat
updated 3 days ago by
colindaven
6.4k • written 4 days ago by
ramendra.sarma
• 0
0
votes
4
replies
392
views
Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in python.
k
3 days ago by
beginner123
• 0
0
votes
2
replies
228
views
java.nio.bufferunderflowexception haplotypecaller error for bqsr reads
deducplicated
java.nio.bufferunderflowexception
haplotypecaller
bqsr
3 days ago by
analyst
▴ 50
0
votes
1
reply
202
views
extract viral protein of interest from 10k whole viral genomes
nBLAST
viral-genome
updated 6 days ago by
Ram
43k • written 6 days ago by
Shwetha
• 0
0
votes
0
replies
163
views
Marker Features variance by cluster, sample, and treatment group
Seurat
scATAC-seq
ArchR
updated 6 days ago by
Ram
43k • written 6 days ago by
naomiboldon
• 0
1
vote
3
replies
280
views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk
vcf
liftover
updated 6 days ago by
Ram
43k • written 6 days ago by
Omics data mining
▴ 260
0
votes
5
replies
316
views
Too many unpaired forward reads found by Trimmomatic
Trimmomatic
3 days ago by
SilhouetteQ
• 0
0
votes
1
reply
187
views
Alignment of samples with spike-in
alignment
multimapping
RNA-seq
ChIP-seq
spike-in
updated 6 days ago by
GenoMax
142k • written 6 days ago by
maria.soler
• 0
0
votes
2
replies
291
views
How are score_weights calculated in this code?
single-cell
5 days ago by
carolofharvest
▴ 40
0
votes
1
reply
222
views
How to convert Haps file to vcf file?
pre-phasing
GWAS
imputation
updated 6 days ago by
curious
▴ 750 • written 6 days ago by
SeoGyun
• 0
0
votes
0
replies
156
views
Trouble converting tfam and tped to map and ped files
plink
ped
tfam
tped
map
6 days ago by
Samantha
• 0
0
votes
1
reply
191
views
Microbial Signal Transduction Database
MiST
updated 6 days ago by
zx8754
11k • written 6 days ago by
Shravani
• 0
0
votes
0
replies
144
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq
imprinted
10x
genes
6 days ago by
singcell
• 0
0
votes
1
reply
216
views
When should I use R-MarkDown over R-Script ?
r
rscript
rmarkdown
updated 6 days ago by
ATpoint
82k • written 6 days ago by
Amr
▴ 160
0
votes
2
replies
228
views
LncRNA Nomenclature
ENST
nomenclature
lncrna
GBB
ENSG
6 days ago by
jain72744
▴ 10
3
votes
1
reply
206
views
Question about methylation location
Methylation
WGBS
bisulfide
updated 6 days ago by
dthorbur
★ 2.0k • written 7 days ago by
Eren
• 0
0
votes
0
replies
154
views
Krona Pie-chart taxanomy IDs were not found warning. Taxonomy Classification Metagenomics
Classification
Metagenomics
Krona
Kraken2
7 days ago by
Aytaç
• 0
0
votes
0
replies
169
views
How do I calculate SE or P value if I only have BETA
prscsx
beta
se
pvalue
updated 6 days ago by
zx8754
11k • written 7 days ago by
curious_butterfly
• 0
0
votes
0
replies
161
views
supervised admixture
supervised
admixture
7 days ago by
RT
▴ 10
0
votes
2
replies
226
views
Presence of unknown sites in ANNOVAR output file
ANNOVAR
updated 6 days ago by
Ram
43k • written 7 days ago by
sainavyav22
• 0
3
votes
4
replies
317
views
Truncated metadata file report from ENA Portal API
ena
python
6 days ago by
Giulia
• 0
0
votes
0
replies
188
views
What is workflow for de-novo assembling of nuclear and mito genomes of non-model organisms
de-novo
WGS
DNA-seq
assembling
7 days ago by
Matvii Mykhailichenko
• 0
0
votes
1
reply
154
views
input file for alternative splicing in rmats in linux
rmats
updated 7 days ago by
Ram
43k • written 7 days ago by
Lambodarswain316
• 0
1
vote
1
reply
452
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 7 days ago by
Jaïr
• 0 • written 4 months ago by
NorbertK
▴ 10
1
vote
0
replies
140
views
What is Deepvariant default filtering values ?
vcf
calling
filter
variant
deepvariant
7 days ago by
Shae
▴ 10
1
vote
1
reply
160
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
updated 7 days ago by
andres.firrincieli
3.6k • written 7 days ago by
kacollier
▴ 30
0
votes
0
replies
118
views
Summary Statistics SNPs not found in Target data
SNP
plink
PRS
updated 7 days ago by
Ram
43k • written 7 days ago by
curious_butterfly
• 0
1
vote
3
replies
259
views
Help with Biopython for Beginner
Python
ORF
FASTA
Biopython
updated 7 days ago by
GenoMax
142k • written 8 days ago by
cput
• 0
0
votes
0
replies
121
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
8 days ago by
asalimih
▴ 60
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 8 days ago by
Emanoelle
• 0 • written 5.8 years ago by
Elizabeth
▴ 30
0
votes
0
replies
108
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 8 days ago by
Ram
43k • written 8 days ago by
mathavanbioinfo
▴ 90
3
votes
4
replies
4.0k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 8 days ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.5k
5
votes
7
replies
483
views
RNA seq analysis
DESeq
RNA-seq
1 day ago by
Jacek
▴ 20
0
votes
0
replies
145
views
Chance for trained without experience
bio
updated 8 days ago by
ATpoint
82k • written 8 days ago by
shehab
• 0
0
votes
0
replies
126
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
8 days ago by
Omics data mining
▴ 260
0
votes
2
replies
187
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
8 days ago by
njornet
▴ 20
0
votes
2
replies
212
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 8 days ago by
Adam
▴ 30 • written 8 days ago by
Darya
• 0
0
votes
5
replies
272
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 8 days ago by
Joe
21k • written 8 days ago by
Lemonhope
• 0
0
votes
0
replies
180
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
7 days ago by
Winter
• 0
0
votes
0
replies
108
views
meffil.snp.concordance
meffil
methylation
snp_concordance
9 days ago by
kyj222637
• 0
0
votes
1
reply
161
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 8 days ago by
Bastien Hervé
5.3k • written 9 days ago by
sooni
▴ 20
1
vote
3
replies
253
views
STAR aligner error
RNA-seq
STAR
slurm
updated 8 days ago by
Ram
43k • written 9 days ago by
M.
▴ 30
0
votes
0
replies
101
views
monocle 3-- Could not get node in small cluster
monocle3
9 days ago by
synat.keam
▴ 100
0
votes
2
replies
214
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
8 days ago by
Nicholas
• 0
0
votes
1
reply
262
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 9 days ago by
GenoMax
142k • written 9 days ago by
Sony
▴ 10
5
votes
5
replies
307
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
8 days ago by
Chris
▴ 280
0
votes
2
replies
226
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 8 days ago by
swbarnes2
14k • written 9 days ago by
ahmad.sajad4541
• 0
1
vote
9
replies
391
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 6 days ago by
i.sudbery
19k • written 9 days ago by
Assa Yeroslaviz
★ 1.8k
377 results • Page
2 of 8
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