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Recent Replies
Comment: Reconstruction of locus, order contigs
by
dthorbur
★
2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
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@atpoint I checked all transcripts of GAPDH. they all have 0 TPM.
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> 1) I do not want to merge the MEs rather I asked about replicates, as
> some replicates of same sample are showing different behavior for…
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For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line.
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Second what is said above, ensembl_id is the unique identifier.
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It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
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I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
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Comment: Help! Reconstruction of locus, order contigs
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I don't understand your comment. What do you mean?
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Thanks for your reply, my idea is not to have to write it down. What I have is an alignment of the .gbk from the progressiveMauve. It would…
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I did some digging aroumd, no static binary. Plus it seems you need to roll your own program.
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
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We tested it, however, it does not seem to produce a fast a file of the results or anything that we can easily parse. It produces a CIGAR a…
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