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0 votes
5 replies
1.5K views
nanopore SNV callers returns empty VCF
snv_caller nanopore
updated by Istvan Albert 10K • | written by Meghan.T 1
13 votes
3 replies
4.0K views
Tutorial: Avoiding the Pitfalls of the Anaconda License: A Practical Guide
conda anaconda license
written by Juke34 949
0 votes
2 replies
929 views
How many cells are needed in subcluster to draw conclusions?
immunology t-cells scrna-seq
written by S 0
0 votes
2 replies
1.0K views
Question about assigning gene names, tximport and DESeq2
tximport deseq2
written by bioinfo 19
0 votes
3 replies
1.7K views
RNASeq: Confused about adapters with barcodes and seq company's filtering
atria rnaseq adapter-trimming
updated by GenoMax 16K • | written by Davor 0
1 vote
2 replies
1.4K views
VEP won't show symbols for all variants; SnpEff will, but won't for others
vep snpeff
updated by Jeremy Leipzig 2.3K • | written by mary.v.volkova 3
0 votes
2 replies
901 views
How to plot LMER estimate values in heatmap ?
cell scrnaseq tf lmer transcription
written by carolofharvest 6
1 vote
2 replies
2.1K views
News: Final Call - Next-Generation Sequencing Data Analysis: A Practical Introduction (April 2-4 in Munich) - Only 2 seats left
workshop rnaseq variant-calling illumina dnaseq
written by ecSeq Bioinformatics 9
0 votes
1 reply
862 views
Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Analysis
tehnical-replicates deseq2 rna-seq
updated by Ram 4.5K • | written by hellothere 0
0 votes
3 replies
1.4K views
Can anyone help me download the dbSNP data for Bos taurus ARS-UCD1.3?
gwas genetics wgs
updated by Ram 4.5K • | written by K 0
0 votes
1 reply
975 views
Co-expression analysis of miRNAs and target mRNAs
mirna targets co-expression mirna-mrna
updated by i.sudbery 2.3K • | written by baibhu1234 6
0 votes
0 replies
530 views
Beagle Imputation
beagle imputation
written by mahlet.teka 0
0 votes
0 replies
591 views
Issue with bam-readcount and fpfilter.pl: Saying "failed to get readcounts for variant allele"
bam-readount somaticsniper
updated by Pierre Lindenbaum 17K • | written by 1phamcha2 0
2 votes
2 replies
1.3K views
miRNA-seq: QC reports and workflow
mirna-seq ion-torrent rna-seq fastqc
written by omicon 4
1 vote
0 replies
560 views
How to Run Large-Scale Foldseek Comparisons (Human vs. C. elegans)
c.elegans foldseek genes orthologs homologs
written by bioinformatics_rk 1
0 votes
1 reply
1.5K views
Recommendations for Reference-guided de novo assembly assembly approaches or pipelines?
ont assembly wgs nanopore genomics
updated by shelkmike 201 • | written by Mark 6
0 votes
1 reply
856 views
Per Base Sequence Content FastQC
rna-seq quality-control
updated by shelkmike 201 • | written by Ariadna 2
0 votes
2 replies
1.2K views
Seeking Advice on Handling Multiple Datasets for Differential Analysis in Transcriptomics
data-integration differential-analysis transcriptomics data-normalization
written by Riley J 0
0 votes
3 replies
1.4K views
Population genetics with mutect2 data
haplotypecaller mutect2
updated by LauferVA 497 • | written by slzr_ 1
0 votes
2 replies
881 views
ggplot of two data set with different colors
geom_line scale_colour_manual ggplot2
updated by Watermelon 2 • | written by gogeni5529 9
0 votes
2 replies
807 views
Gene to use for phylogenic analysis
phylogenic-analysis
updated by Ram 4.5K • | written by uttkarsh 0
0 votes
0 replies
503 views
Chrom3D
chrom3d interchromosomal genome model
written by desptsp 0
0 votes
1 reply
771 views
Scanpy use with reticulate in R : var_group_positions argument set up
r reticulate scanpy
written by ZheFrench 60
0 votes
3 replies
1.2K views
CPTAC Data analysis
cptac proteomics
updated by LauferVA 497 • | written by jain72744 1
29 votes
13 replies
46K views
hg19 Centromere Position and Chromosome Length
centromere ucsc
updated by Ram 4.5K • | written by Jdk 26
0 votes
3 replies
1.3K views
How to Process Multiple SRRs for the Same BioSample ?
geo rna-seq ncbi mirnas rna
updated by GenoMax 16K • | written by omicon 4
0 votes
3 replies
1.6K views
Methylation cpg probes annotation
annotation methylation cpg tcga
updated by GenoMax 16K • | written by jain72744 1
0 votes
2 replies
1.5K views
How to convert .ab1 to fastq
fastq
updated by size_t 12 • | written by dr.suvarnakapale 0
0 votes
1 reply
655 views
How to deal with missing annotations in RNASeq data?
eggnogmapper rnaseq
updated by dthorbur 350 • | written by v.berriosfarias 14
0 votes
2 replies
1.1K views
Why protein sequence from AUGUSTUS can't find in blast
genome augustus galaxy annotation
written by Jl 1
0 votes
2 replies
1.1K views
How to make amazing UMAP to spatialPlot GIF
umap spatial
written by noodlejackson 4
0 votes
1 reply
718 views
Software for visualizing mass spectromety spectra
ms mass spectrometry
updated by Joe 2.2K • | written by emalekos 4
0 votes
1 reply
563 views
Detecting Aneuploidy from Bulk RNA-Seq Data
aneuploidy rna-seq
updated by ATpoint 9.1K • | written by bioinfo1990 1
0 votes
0 replies
682 views
GSA genome studio call rate calculation issues
genome gsa studio
written by 1769mkc 127
0 votes
2 replies
1.4K views
Parsing BAM file per cell from Smart-Seq2 dataset
starsolo star bam smartseq2 alignment
updated by dsull 781 • | written by brutonk 0
0 votes
0 replies
863 views
News: Spring School in Bioinformatics - online, March 31 to April 4
singularity ngs rnaseq phylogenomics docker
written by Physalia-courses 281
0 votes
2 replies
1.1K views
Gene Expression Timeline Analysis for N=1
analysis gene expression
written by ATRX 118
0 votes
1 reply
1.4K views
Interactive UMAP for scRNA-seq Data
html rmarkdown interactive-umap scrna-seq
updated by S 0 • | written by s 0
0 votes
0 replies
688 views
Converting PLINK GWAS Summary Statistics (--glm) to BED Format for UCSC Liftover
plink liftover plink2 bed gwas
written by Mllepnos 0
4 votes
0 replies
952 views
Tool: PAN-GO Functionome: known functions of all human protein-coding genes
goenrichment function go goterms geneontology
written by geneontologyhelp 57
0 votes
1 reply
1.0K views
How to clarify results from an HLA association analysis - Omnibus tests/HATK/other options
omnibus hla hatk gwas regression
updated by grover.sandeep 3 • | written by s.may-wilson 6
0 votes
0 replies
851 views
News: Multi-Omics Integration with Machine Learning — Online Course!
machine-learning multi-omics depp-learning data-integration bigdata
written by Physalia-courses 281
0 votes
2 replies
1.0K views
Alignment algorithm for DNA sequencing
sequencing data dna
updated by ATpoint 9.1K • | written by QX 9
0 votes
1 reply
1.0K views
RepeatMasker UCSC track
repeatmasker
updated by Michael Dondrup 5.6K • | written by frarodmar17 4
0 votes
0 replies
773 views
rarefaction curve metagenomic reads show species saturation around 100 000 reads
metagenomics rarefaction kraken2
written by rDNA 2
0 votes
4 replies
2.3K views
Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argument
cibersortx
updated by jared.andrews07 1.9K • | written by Pumla 0
0 votes
22 replies
19K views
BLAST Database error: Database memory map file error
makeblastdb
updated by goubert.clement 3 • | written by Martina 0
0 votes
2 replies
913 views
Looking up gene name from mRNA ID using biomaRt
r mrna biomart
updated by Ram 4.5K • | written by Khôi 0
0 votes
0 replies
535 views
Interpreting negative gap length in MUMMER4
mummer translocation
written by cedric.blais 2
0 votes
0 replies
579 views
Uncertainty about deepTools computeMatrix options for RNA modifications
deeptools metagene computematrix
written by Kyle 0
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