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0 replies
677 views
News: Live Online Course: Introduction to Python, April, 2025
python programming course
written by soledad.esteban 1
2 votes
6 replies
1.9K views
Multiple factors in DESeq2
deseq2
written by noodlejackson 4
2 votes
2 replies
1.0K views
Why do RNAseq reads align to non-gene regions of the bacterial genome?
rnaseq transcription
updated by i.sudbery 2.3K • | written by Texx 4
0 votes
1 reply
1.1K views
Confused about discovering novel genes in a model organism using STAR, Trinity, and reference genomes
star trinity rnaseq
updated by Ram 4.5K • | written by zizigolu 438
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7 replies
1.8K views
nanopore variant calling
pacbio long-read nanopore
updated by colindaven 844 • | written by Meghan.T 1
0 votes
3 replies
1.3K views
enrichGo problem
enrichgo
updated by Arup Ghosh 402 • | written by mimijane1664 0
0 votes
4 replies
1.3K views
Seeking Help for Reanalysis of Raw WES Data
wes
updated by Jeremy Leipzig 2.3K • | written by lidia.manczak 0
0 votes
8 replies
1.6K views
Biscuit Alignment and Index failed - WGBS - Bisulfite analysis
bwa biscuit bisulfite
updated by Ram 4.5K • | written by Palanikumar.Palanichamy 0
0 votes
3 replies
1.2K views
illumina: Adapter Confusion
illumina adapter
updated by GenoMax 16K • | written by lingjun meng 2
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5 replies
1.6K views
Identifying primer sequences from raw FASTQ files
primers
written by Chandini 0
0 votes
7 replies
2.6K views
HTSlib threads when ingesting large bgzipped FASTA
htslib samtools bgzip c
updated by aw7 40 • | written by Oleksii 0
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3 replies
1.3K views
question for dowloading Protein fasta sequence by edirect using while
edirect
updated by vkkodali_ncbi 387 • | written by 诗友 0
1 vote
2 replies
1.3K views
Validate RNAseq Models in Microarray Data?
microarray rnaseq coxlasso fpkm
updated by ATpoint 9.1K • | written by vitor 13
0 votes
0 replies
580 views
Restrict anlaysis of WGS VCF file to Refseq Select using snpeff
refseq vcf wgs
written by Gabriel 0
0 votes
2 replies
952 views
Novel genes in model organisms
homologue genome gene
written by zizigolu 438
0 votes
1 reply
1.4K views
Subset reads based on Phred-score ranges
phred sequencing ngs
updated by GenoMax 16K • | written by Mark 6
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3 replies
1.5K views
Reasoning - Why is it invalid to compare ratios of TPMs?
rnaseq analysis expression normalization differential tpm batch effect
updated by ATpoint 9.1K • | written by VTh 0
0 votes
2 replies
1.3K views
DEGs Analysis For a Microarray Data that has one biological replicates per cell line in each condition
analysis degs microarray
written by mete.han.celebi 1
0 votes
6 replies
1.7K views
The soapdenovo2 genome assembly is highly fragmented - learning genome assembly with public data
gene soapdenovo2 assembly
updated by lieven.sterck 1.6K • | written by JieQY 0
2 votes
3 replies
1.8K views
VCF filtering with Allele Balance (AB) using FilterVcf (Picard)
allele-balance filtervcf picard gatk
updated by GokalpC 19 • | written by Eduardo 2
0 votes
4 replies
1.8K views
Haplotype analysis
founder haplotype-analysis
written by disha3786 0
0 votes
4 replies
1.3K views
Indica rice genome and annotation files
rnaseq
updated by Chander Kant Chaudhary 1 • | written by chandimaa 0
0 votes
6 replies
1.9K views
Question: Making primers for cloning and transfection
transfection cloning primer pcr gene
updated by jared.andrews07 1.9K • | written by Lu Adr 0
0 votes
0 replies
677 views
Help with the interpretation of Silhouette width averaging
clustering kmeans cluster silhouettemethod
written by Maria Jose 0
0 votes
1 reply
1.6K views
Job: Open Rank Tenure-earning Faculty in the Department of Biostatistics & Bioinformatics
cancer oncology tenure-earning faculty bioinformatics
updated by GenoMax 16K • | written by maritza.garcia-saavedra 0
0 votes
1 reply
1.6K views
Job: Open Rank Tenure-earning Faculty in the Department of Biostatistics & Bioinformatics
oncology faculty leadership
updated by GenoMax 16K • | written by maritza.garcia-saavedra 0
0 votes
2 replies
884 views
Pre-Alignment process
read_depth_measure
written by AIMAR 7
0 votes
0 replies
706 views
Differential methylation analysis using Dorado
dorado m6a drs nanopore
written by baibhu1234 6
0 votes
0 replies
509 views
Annotate Phylogentic Tree with classes
python tree phylogenetic analysis
written by BIANCA 0
0 votes
1 reply
775 views
Is it possible for genomic DNA to be sequenced in a modern RNA-seq protocol?
transcriptome genome rna-seq
updated by GenoMax 16K • | written by predeus 212
0 votes
3 replies
1.2K views
Picard gives empty value for HS_LIBRARY_SIZE when running CollectHsMetrics
sequencing library picard
written by Bertalan_Takacs 14
0 votes
2 replies
977 views
single cell compositional analysis - how adjusting for covariates (age)
compositional-analysis rna-seq single-cell
written by Francesco 2
0 votes
1 reply
1.0K views
Differential Expression Analysis of scRNA seq data with Pseudobulking
edger scrnaseq pseudobulking
updated by ATpoint 9.1K • | written by Sophia 0
0 votes
0 replies
731 views
News: Last Two Spots Available – R/Bioconductor for Mass Spectrometry & Proteomics
proteomics bioconductor mass-spectrometry r
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
606 views
News: Last-Minute Open Spots for Our RNA-Seq Workshops!
single-cell transcriptomics scrnaseq rnaseq
updated by Ram 4.5K • | written by ecSeq Bioinformatics 9
0 votes
2 replies
1.7K views
advice on rooting a tree in R
r tree ggtree phylo
written by Matteo Ungaro 16
0 votes
1 reply
632 views
Beagle removed many sites in the target dataset after imputation
genotype beagle imputation
written by LCG 0
0 votes
0 replies
676 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study: Application in Immunosenescence
single-cell
written by Novogene 54
0 votes
2 replies
1.9K views
ArchR error Error in grid.Call.graphics(C_downvppath, name$path, name$name, strict): Viewport 'Norm. Enrichment -log10(P-adj) [0-Max]_heatmap_body_1_1' was not found
archr
written by Bioinformatics_16 0
0 votes
5 replies
10K views
normalization to "housekeeping" genes of RNAseq data vs qPCR result
qpcr rnaseq
updated by Conor 0 • | written by cwwong13 4
0 votes
12 replies
2.0K views
MD5 Mismatch on chrY When Extracting CRAM Region Despite Correct Reference Genome
reference-genome
updated by GenoMax 16K • | written by offset 0
2 votes
8 replies
3.9K views
Normalizing TCR data
analysis
updated by apontel 0 • | written by ruchitkpanchal 2
0 votes
1 reply
962 views
Alternative normalization strategy for RNA-seq data with global downregulation
deseq2 rna-seq geneexpression normalization mirna
updated by ATpoint 9.1K • | written by Nicolas 0
0 votes
2 replies
810 views
Extract Fungal mRNA reda from RNASeq Sample
rnaseq rna fungus bbsplit.sh transcriptomics
written by SomeOne 33
0 votes
0 replies
864 views
cNMF missing spectra iterations - what am I doing wrong?
cnmf python single-cell
written by yura.grabovska 94
0 votes
0 replies
448 views
Repeated sequences
repetitive sequences
written by frarodmar17 4
0 votes
7 replies
1.8K views
Best way to assess relatedness of eukaryotic organisms from sequencing reads?
phylogenomics phylogenetics ngs kmer sequencing
updated by colindaven 844 • | written by Mark 6
1 vote
0 replies
547 views
Potential Contamination in ARG Metagenomic Analysis – How to Filter Out Reads?
metagenomics arg
written by JH 1
0 votes
2 replies
2.0K views
Negative coverage depths when running jgi_summarize_bam_contig_depths (Metabat2)
assembly metagenome metabat
written by amir.rakhimov.b 0
0 votes
0 replies
544 views
How to interpret this RNA-seq multi-peak distribution density plot?
rna-seq distribution
written by Omar 0
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