Hello everyone,
I have raw data from Whole Exome Sequencing (WES) and would like to perform a reanalysis. I am looking for guidance on where I can do this, preferably with access to bioinformatics tools or experts who could assist in the process.
Are there any platforms, research groups, or institutions that offer free or low-cost support for reanalyzing WES data? Any recommendations for open-source pipelines or bioinformatics communities that could help with variant calling and interpretation would also be appreciated.
Thank you in advance for any advice!
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lidia.manczak •
I think it is probably worth investing the time needed to get a professional community pipeline running like https://nf-co.re/sarek/3.5.1/
This way you can stick to best practices and also gain support from a vibrant community.
there is live help on the sarek slack in nf-core https://nf-co.re/join/slack
Dear Lidia
There are various thread already posted in BIostars and several pipelines from SeqMule, Mutect, etc. For example: Whole Exome Sequencing analysis pipeline
I'd like to suggest our CONVEX pipeline if you or someone is interested: https://github.com/prashbio/CONVEX Regards Prash
Thank You :)
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