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GokalpC
GokalpC
Reputation:
190
Joined:
7.6 years ago
Last seen:
1.3 years ago
Location:
Turkey/Ankara/Intergen
Latest posts by user
1 vote
0 replies
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Answer: Answer: VCF filtering with Allele Balance (AB) using FilterVcf (Picard)
written by GokalpC • GokalpC
0 votes
1 reply
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Answer: Answer: Haplotype analysis
written by GokalpC • GokalpC
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Answer: Answer: HaplotypeCaller Not Detecting Variants
written by GokalpC • GokalpC
3 votes
1 reply
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Answer: Answer: Haplotype analysis
written by GokalpC • GokalpC
2 votes
0 replies
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Answer: Answer: Variant Missing in VCF but Present in BAM Files: Discrepancy Identified via IGV
written by GokalpC • GokalpC
3 votes
1 reply
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Answer: Answer: Manta analysis in WES
written by GokalpC • GokalpC
2 votes
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Answer: Answer: No @hd header returned in sam file when running bwa mem
written by GokalpC • GokalpC
1 vote
0 replies
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Comment: Comment: Counting the number of SNPs (VCF) for each genomic coordinates (BED)
written by GokalpC • GokalpC
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Answer: Answer: Recommended mapper
written by GokalpC • GokalpC
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Answer: Answer: Sort a sub column within a column while keeping the feature (LINUX)
written by GokalpC • GokalpC
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Comment: Comment: FASTQ to VCF pipeline question
written by GokalpC • GokalpC
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Answer: Answer: How to download the Homo_sapiens.GRCh38.100.gtf and Homo_sapiens.GRCh38.dna.prim
written by GokalpC • GokalpC
2 votes
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Answer: Answer: Freebayes for creating VCF : meaning of QUAL
written by GokalpC • GokalpC
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Answer: Answer: Runs of homozygosity in Plink
written by GokalpC • GokalpC
1 vote
1 reply
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Answer: A: How to concatenate four fastq files of NextSeq in linux?
written by GokalpC • GokalpC
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Answer: A: merge VCF single variants G>A and C>A into GC>AA
written by GokalpC • GokalpC
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Answer: A: What does it mean if a gene is not found in an assembly?
written by GokalpC • GokalpC
0 votes
1 reply
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Comment: C: variant calling - data from IonTorrent technology
written by GokalpC • GokalpC
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Comment: C: how to fix the error - Too many open files - by changing code in python3.7
written by GokalpC • GokalpC
0 votes
1 reply
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Comment: C: how to fix the error - Too many open files - by changing code in python3.7
written by GokalpC • GokalpC
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