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3 votes
2 replies
1.8K views
Plink removing a lot of samples
plink2 plink gwas
written by Steven • Steven
1 vote
9 replies
2.4K views
How to determine new bacterial species from custom isolate?
species genome submission
updated by michael.ante michael.ante • written by marongiu.luigi marongiu.luigi
0 votes
0 replies
466 views
The antibiotic resistome (args_oap, another bioinformatics tools)
resistome metagenome args_oap
updated by Ram Ram • written by aLex97 • aLex97
0 votes
0 replies
609 views
News: Gene Set Enrichment Analysis in R/Bioconductor course - Online, March 3-6. Last call
r bioconductor gene-set-enrichment-analysis gsea
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
849 views
Read depth for RNA-seq based Variant Calling
mouse read-depth rna-seq variant alignment
updated by Ram Ram • written by vireen105 • vireen105
0 votes
4 replies
5.3K views
News: Web Scraping and Text Analysis in R (March 21st - April 11th, 2025) Course
rstats data-analysis web-scraping r
written by Transmitting Science communication • Transmitting Science communication
1 vote
2 replies
1.4K views
HaplotypeCaller Not Detecting Variants
gatk variant-calling wgs
updated by Ram Ram • written by akshit • akshit
0 votes
3 replies
1.6K views
NCBI genome submission validation error
genome annotation
updated by lieven.sterck lieven.sterck • written by slin023 • slin023
0 votes
1 reply
864 views
Query Regarding Missing Sample Paths in Graph-Based Pangenome Construction
variant-calling pangenome giraffe vg haplotypes
updated by Ram Ram • written by s_135 • s_135
2 votes
4 replies
1.5K views
Variant Missing in VCF but Present in BAM Files: Discrepancy Identified via IGV Report in Join-Call Project
gatk deepvariant bwa
updated by Pierre Lindenbaum Pierre Lindenbaum • written by lunping98 • lunping98
0 votes
2 replies
886 views
Potential mapping issues in Cas9 knockout cells with STAR (the truncated RNA)
star rna-seq
written by Weize • Weize
0 votes
3 replies
1.1K views
Normalizing Peaks in ChIP seq
chip-seq
updated by Ram Ram • written by mropri mropri
1 vote
0 replies
630 views
Minimal Quality Control Thresholds in Shotgun or Amplicon Metagenomics for non assembly based analysis
qc microbiome fastp
written by Maxwell • Maxwell
0 votes
0 replies
399 views
Estimating the Relative Abundance of a Species in a Mixed Microbial Community Using 16S PCR
16s
written by ljrdain2508 • ljrdain2508
0 votes
2 replies
1.4K views
Training Augustus for Gene Prediction
augustus busco genome prediction gene
updated by Buffo Buffo • written by shiv • shiv
0 votes
1 reply
733 views
Mus musculus genome scaffold discrepancy
genome ncbi
updated by Wayne Wayne • written by SJP • SJP
0 votes
1 reply
656 views
Edit Dataset FASTQ files using ReadStore Command Line Interface
fastq readstore cli
updated by ATpoint ATpoint • written by DNAStar • DNAStar
0 votes
0 replies
395 views
plyranges – joining gpos object only by the start coordinate of the range
genomicranges plyranges
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Kateřina • Kateřina
0 votes
1 reply
656 views
Fast querying of variant metrics with database
python database
updated by Pierre Lindenbaum Pierre Lindenbaum • written by DBScan • DBScan
1 vote
2 replies
995 views
Mitochondrial Variant Calling Tools
mitochondrial ngs variant calling illumina
written by adarsh • adarsh
0 votes
3 replies
7.0K views
How to use harmony with scanpy?
scanpy harmony
updated by Rezin • Rezin • written by bioinfo • bioinfo
0 votes
2 replies
1.2K views
SpliceAI custom gene annotation file
gencode spliceai
written by ClkElf • ClkElf
1 vote
0 replies
1.2K views
Job: Postdoc in Reproductive genetics - bioinformatics
sweden bioinformatics genetics postdoc
written by pol.sole.navais • pol.sole.navais
0 votes
0 replies
1.4K views
What is a recommended maximum read depth threshold for DNA variant filtration, supported by scientific articles?
filtering articles-search read-depth variant-calling
written by Sofya • Sofya
1 vote
13 replies
3.9K views
How are probabilities of insertions and deletions encoded in FASTQ?
fastq phred quality score nanopore pacbio indels
updated by Jeremy Leipzig Jeremy Leipzig • written by shelkmike shelkmike
0 votes
2 replies
841 views
samtools mpileup and samtools tview give different reads quality results
samtools tview mpileup
written by cocoboxt • cocoboxt
0 votes
12 replies
9.3K views
picard installation failure
error software picard
updated by lieven.sterck lieven.sterck • written by sanariyaz21 • sanariyaz21
0 votes
3 replies
1.1K views
low alignment rate for RNA-Seq data
rice low alignment rna-seq
updated by GenoMax GenoMax • written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.1K views
Optimal Computer Configuration for Bioinformatics Analysis
scrna-seq computer
written by Song • Song
0 votes
0 replies
626 views
Anndata vs cloupe
seurat cloupe scanpy anndata
written by Rika • Rika
0 votes
3 replies
1.0K views
Gene Mapping Issue
david
updated by lieven.sterck lieven.sterck • written by won • won
0 votes
0 replies
1.4K views
Job: Assistant, Associate, or Full Project Scientist in Molecular Biology
molecular teaching biology
written by UCSDBioSci • UCSDBioSci
0 votes
4 replies
1.5K views
RNA variant calling - SNP and indels files
mouse variant_calling genomics rna
written by littlebioinformatician • littlebioinformatician
0 votes
4 replies
1.5K views
Manta analysis in WES
deletion manta wes sv exomiser
written by Eduardo • Eduardo
0 votes
1 reply
526 views
All VS All contamination check for tumor samples
tumor contamination
written by mps • mps
0 votes
2 replies
782 views
Determine binding sites in unstimulated TF ChIP-seq samples
chip-seq csaw
written by Jacek • Jacek
0 votes
1 reply
584 views
GO analysis custom reference?
go-analysis
updated by dthorbur dthorbur • written by Pit • Pit
0 votes
2 replies
666 views
Query on WES
wes
written by rauf.sania786 • rauf.sania786
0 votes
0 replies
604 views
News: Introduction to Machine Learning in R online course
r statistics ai machine-learning
updated by Ram Ram • written by Transmitting Science communication • Transmitting Science communication
0 votes
7 replies
3.9K views
Nanopore long-read sequencing doubts and problems
minmap2 long-reads nanoplot nanopore
updated by colindaven colindaven • written by ferran.llobet • ferran.llobet
0 votes
3 replies
1.2K views
cannot install GO.db in windows
go.db
updated by i.sudbery i.sudbery • written by Naila • Naila
0 votes
5 replies
1.7K views
conda :FileNotFoundError: [Errno 2] No such file or directory
conda
updated by Mensur Dlakic Mensur Dlakic • written by JieQY • JieQY
0 votes
5 replies
1.4K views
Samtools view only showing read2 for PE mapped reads
samtools mem2 bwa flagstat mapping
updated by Pierre Lindenbaum Pierre Lindenbaum • written by knickknack • knickknack
0 votes
3 replies
3.0K views
Color AlphaFold PDB by B-Factor (pLDDT) in PyMol
pdb pymol
updated by Mensur Dlakic Mensur Dlakic • written by Schmoho • Schmoho
0 votes
2 replies
2.6K views
How to Resolve Overlapping Peaks in Sanger Chromatograms?
sequence-analysis sanger-sequencing dna-sequencing chromatogram
written by JOSÉ • JOSÉ
0 votes
3 replies
1.8K views
How to remove rows with empty gene symbols from a seurat object?
seurat
updated by Michael Dondrup Michael Dondrup • written by Chris • Chris
0 votes
12 replies
2.7K views
Phylogenetic tree from whole genome using BUSCO
busco whole_genome phylogenetic_tree
written by manaswiniparija3 • manaswiniparija3
0 votes
0 replies
588 views
News: Course on Ancient Metagenomics - online, 27-29 May
ancientdna metagenomics ameta
written by Physalia-courses Physalia-courses
0 votes
1 reply
1.0K views
Difference between trim galore report and Fastqc pre trimming
trim-galore
updated by Ram Ram • written by Luern • Luern
0 votes
0 replies
576 views
From Cram to gVCF
cram gvcf
written by heureuse • heureuse
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