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0 votes
2 replies
1.3K views
Salmon RNA-Seq transcript quantification
salmon rna-seq
updated by Rob 747 • | written by Fuat 0
0 votes
0 replies
615 views
News: Course: Comparative Genomics (ONLINE; April 7-11)
comparative-genomics sv snv genome-annotation
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
1.1K views
Discrepancy in GEO2R vs. Raw Data Analysis: Significance of DEGs
raw-data-analysis microarray geo2r probe-ids
updated by ATpoint 9.1K • | written by Saeedeh Salehi 2
0 votes
5 replies
1.4K views
DiffBind Normalization ATAC-Seq Question: When to drop a sample?
atac-seq diffbind
written by John 0
0 votes
2 replies
926 views
Freelance career advice
freelance job career
updated by Ram 4.5K • | written by José 0
0 votes
0 replies
496 views
Pathways Logic
logic reactome netlist
written by sciwiseg 0
1 vote
2 replies
1.1K views
CNV detection
ressources cnv large_cohort computation
updated by cmdcolin 448 • | written by heureuse 1
0 votes
0 replies
402 views
cfRNA-seq data
cfrna-seq
written by frarodmar17 4
0 votes
2 replies
867 views
fastq direction
bioinfo
written by gagi1993 0
0 votes
4 replies
1.3K views
Seeking chloroplast and mitochondrial reference for barley
barley chloroplast reference mitochondrial genome
updated by andrew 1 • | written by IrK 10
1 vote
2 replies
1.2K views
Help with Reproducing Global Bird Migration Flyway Map in R
r flyway map offtopic
updated by Dunois 301 • | written by Biodeer 5
7 votes
8 replies
3.1K views
Tool: Fast, flexible grep for very large FASTQ files
grepq grep-like fastq
written by milesforjazz 8
1 vote
1 reply
908 views
Changing order of elements on Chord diagram in R
chort chart r diagram plot
updated by kalavattam 85 • | written by Jonathan Yoou 7
1 vote
3 replies
1.3K views
Using other individuals and related species to improve a de novo genome assembly
illumina
updated by Darked89 469 • | written by Ed 991 1
0 votes
2 replies
998 views
Sankey plot for unequal node sizes
r sankey network ggplot
written by Luca Arbore 1
0 votes
0 replies
604 views
Best tools for gene regulatory netweork analysis
time-course network transcriptome rna-seq
written by f.tomoyuki 0
0 votes
4 replies
1.3K views
Pymol semaglutide structure
pymol protein pdb tool structure
written by Hansen_869 8
0 votes
0 replies
596 views
Consensus Peak Shifts after dba_count() and Default Peak Width in DiffBind
diffbind chip-seq
written by Siqi 1
0 votes
1 reply
963 views
Variant Validation Tool for Mouse RNA-seq
mouse variants transcriptome validation
updated by Michael Dondrup 5.6K • | written by vireen105 0
0 votes
3 replies
1.8K views
Ensemble Neural Network - Stacking ensemble neural network accuracy is significantly similar or low compared to base models
neural-network gradient-boosting cox random-forest ensemble
written by Yugan Gogul Muthukumar 3
0 votes
1 reply
736 views
How to analysed RNA Seq for multiple samples
rna-seq transcriptome
updated by Mark 173 • | written by Nikesh 0
0 votes
5 replies
1.5K views
Transcriptome Variant Calling Mapping to Introns
mouse introns transcriptome alignment variants
updated by i.sudbery 2.3K • | written by vireen105 0
1 vote
9 replies
2.2K views
How to extract a multiple sequence alignment file from a CRAM file?
samtools cram
updated by cmdcolin 448 • | written by Charles Plessy 293
0 votes
1 reply
744 views
Can DiffBind Perform Peak Calling and Differential Analysis Directly from BAM Files?
diffbind chip-seq
updated by ATpoint 9.1K • | written by Siqi 1
0 votes
6 replies
1.5K views
Dealing with UMIs
umi
written by Ramon 0
0 votes
4 replies
1.7K views
Does sam 2048 flag discriminate secondary from supplementary alignments?
samtools secondary supplementary alignment
updated by GenoMax 16K • | written by resug 4
0 votes
1 reply
1.3K views
monocle 3-- Could not get node in small cluster
monocle3
updated by Prakki Rama 271 • | written by synat.keam 12
0 votes
3 replies
988 views
How to extract CDS from WGS data in rice?
rap-db cds genomics wgs
updated by Mark 173 • | written by Chander Kant Chaudhary 1
0 votes
0 replies
592 views
retrieve type translocation ,deletion, duplication with fusion RNA detection tools
fusions fusioncatcher arriba star
written by ieie 2
0 votes
2 replies
1.0K views
Block size of SSD file storage
snp assembly ssd
updated by GenoMax 16K • | written by Denis 32
2 votes
2 replies
1.3K views
Impact of the number of PCs on the clustering in scRNA seq
clustering pca scrna-seq
updated by rfran010 174 • | written by npont 3
0 votes
2 replies
1.2K views
PLINK 1.07 Segmentation fault (core dumped)
plink
written by Alice 0
0 votes
1 reply
988 views
Installing vg on Mac failed due to "Could not find libomp"
vg
updated by yura.grabovska 94 • | written by yuxinNing 0
0 votes
0 replies
457 views
Integration of metabolomics and transcriptomic of
metabolomics transcriptomics
written by somanin92 0
0 votes
0 replies
458 views
Semaglutide docked in Albumin PDB
sema pdb semaglutide albumin
written by Hansen_869 8
0 votes
3 replies
1.7K views
Forum: Career Advice
careeradvice
updated by lakhujanivijay 594 • | written by Alwaz 0
0 votes
1 reply
806 views
Manta <DUP:TANDEM> interpretation
structural
updated by Pierre Lindenbaum 17K • | written by bharata1803 58
0 votes
5 replies
4.1K views
How to completely align chromosomes/scaffolds from de novo genome assemblies using MUMMER or other tools?
visualization genome alignment
updated by Charles Plessy 293 • | written by Drew 1
0 votes
0 replies
626 views
Read length mismatch between bam and query reads
gmap pacbio
written by 蓝寒 0
0 votes
2 replies
755 views
blastp for short sequences not finding a sequence that I know is in the database
blastp short
written by ricfoz 10
0 votes
3 replies
1.2K views
cytoscape Stringdb identifiers can't be mapped to uniprot or ensembl
map stringdb cytoscape
updated by Scooter 31 • | written by nicole 0
0 votes
2 replies
1.0K views
How to compute DS (diploid dosage) from HDS (haploid dosage) in VCF?
format question dosage hds
updated by LChart 518 • | written by Nadia 0
0 votes
3 replies
1.3K views
How to assess differential gene expression over gradient of treatment levels with DESeq2?
dge deseq2
updated by swbarnes2 1.5K • | written by CephBirk 2
0 votes
1 reply
731 views
Filtering tidySummarizedExperiment by seqnames does not work as expected
tidysummarizedexperiment tidyomics plyranges genomeinfodb
written by Kateřina 0
0 votes
2 replies
1.4K views
What statistical method would you use to compare individual microbiome samples?
comparison statistics microbiome
written by Bertalan_Takacs 14
0 votes
0 replies
647 views
Error: All provided root_pr_nodes must be present in the principal graph. error in monocle3
monocle3 scrnaseq
written by kayah 2
0 votes
0 replies
442 views
select a predefined number of gene sequences from a given dataset
polymorphism to sequences how
written by Gumindu 0
0 votes
0 replies
582 views
Different counts of mapped bases between Samtools coverage and Qualimap bamqc
mapping samtools qualimap
written by pauline10albert 0
0 votes
4 replies
1.0K views
Keep the sequencing depth info when mapping contigs in Minimap2
depth coverage minimap2
written by pauline10albert 0
0 votes
0 replies
501 views
Variant Prioritization Tool for Mouse Transcriptome
mouse variant transcriptome prioritization
written by vireen105 0
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