thanks, much appreciated!
Hi - I am following a cytoscape tutorial on networks.
Using String disease query, I imported the ovarian cancer network and need to integrate the network with a datatable that uses uniprot identifiers. In the Ovarian cancer network, I am trying to map the string identifiers to uniprot but keep getting the error message "failed to map ## identifiers".
The "Map From" column automatically selects "Ensembl", I selected "Uniprot" for the "To" column. The error message indicates: "Failed to may any of 78 identifiers.Mapped:Ensembl -> Uniprot TrEMBL"
I am using cytoscape Version: 3.10.3 on a Mac (OS Sequia 15.4) with Java version: openjdk version "23.0.2" 2025-01-21.
Thanks for any suggestions!
1 answer
You are correct, when we switched to the new backend, we switched to a different canonical name. I'll raise this as an issue.
Well, unfortunately, it's not something that we can change easily. You could probably use the Display name and map it to Uniprot, though.
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