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ZheFrench
ZheFrench
Reputation:
600
Joined:
11.3 years ago
Last seen:
1.3 years ago
Location:
France
Latest posts by user
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Comment: Comment: bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider
updated by GenoMax GenoMax • written by ZheFrench ZheFrench
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2 replies
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bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider as unmapped reads, reads mapped on both human/mouse references.
bbsplit nextflow
updated by GenoMax GenoMax • written by ZheFrench ZheFrench
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Comment: Comment: Scanpy use with reticulate in R : var_group_positions argument set up
written by ZheFrench ZheFrench
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1 reply
758 views
Scanpy use with reticulate in R : var_group_positions argument set up
r reticulate scanpy
written by ZheFrench ZheFrench
2 votes
0 replies
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Answer: Answer: Looking for ressource/database of gene expression matrix for PDX mapped over hum
written by ZheFrench ZheFrench
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1 reply
835 views
Looking for ressource/database of gene expression matrix for PDX mapped over human AND mouse
database pdx
written by ZheFrench ZheFrench
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1 reply
866 views
double @HD header for bam
bam
updated by Ram Ram • written by ZheFrench ZheFrench
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Answer: Answer: SEURAT : loading via h5 file and applying min.cells and min.features
updated by Friederike Friederike • written by ZheFrench ZheFrench
1 vote
1 reply
4.2K views
SEURAT : loading via h5 file and applying min.cells and min.features
seurat
updated by Friederike Friederike • written by ZheFrench ZheFrench
1 vote
0 replies
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Answer: Answer: Spatial Transcriptomics : Nanostring GeoMx DSP
written by ZheFrench ZheFrench
1 vote
4 replies
5.3K views
Spatial Transcriptomics : Nanostring GeoMx DSP
spatial transcriptomics
updated by Nai • Nai • written by ZheFrench ZheFrench
3 votes
1 reply
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Answer: Answer: Filter loom file using cell ids in R using seurat.disk or with loompy in python
written by ZheFrench ZheFrench
3 votes
2 replies
4.5K views
Filter loom file using cell ids in R using seurat.disk or with loompy in python
loompy cells single seurat
updated by crazyscientist • crazyscientist • written by ZheFrench ZheFrench
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Comment: Comment: Naïve question about LC-MS/MS proteomic datasets : looking for ressources, studi
written by ZheFrench ZheFrench
1 vote
2 replies
1.8K views
Naïve question about LC-MS/MS proteomic datasets : looking for ressources, studies with available data
proteomic
written by ZheFrench ZheFrench
1 vote
1 reply
1.6K views
logFoldChange computed by EdgeR different from naive log2FCcomputed based on reads
edger fold-change
updated by Gordon Smyth Gordon Smyth • written by ZheFrench ZheFrench
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1 reply
4.5K views
Filter SingleCellExperiment object just by one gene expression
singlecellexperiment
updated by benformatics benformatics • written by ZheFrench ZheFrench
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1 reply
1.5K views
Normalisation before edgeR for RNA-Seq
rna-seq edger
updated by ATpoint ATpoint • written by ZheFrench ZheFrench
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1 reply
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Comment: Comment: Single Cell Experiment object to Seurat without losing rowData / colData
written by ZheFrench ZheFrench
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3 replies
10K views
Single Cell Experiment object to Seurat without losing rowData / colData
scrna-seq seurat sce
updated by jared.andrews07 jared.andrews07 • written by ZheFrench ZheFrench
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