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0 votes
0 replies
546 views
loss of coverage using gargammel
gargammel.pl art adapterremoval
written by anna.utili 0
0 votes
2 replies
906 views
What is the stance on optical duplicates in RNASeq?
duplicates rnaseq optical-duplicates
written by Davor 0
2 votes
6 replies
2.7K views
How to rank genes for GSEA using edgeR-LRT results ?
deg edger
updated by Gordon Smyth 916 • | written by Picasa 71
0 votes
3 replies
1.7K views
Using bulk RNA-seq DE results to perform PCA in single cell RNA-seq
single-cell scrnaseq
updated by jared.andrews07 1.9K • | written by Oli 0
2 votes
1 reply
788 views
Access to dbSnp137 (GRCh37)
dbsnp137 grch38 dbsnp
updated by Marcellie87 1 • | written by Steven 5
0 votes
0 replies
647 views
How to convert RAP-DB/MSU IDS to RefSeq/Entrez Gene IDS?
irgsp entrez rap-db refseq
written by Chander Kant Chaudhary 1
0 votes
4 replies
4.5K views
Annotating single cell data automatically
single-cell
updated by S.Ghazala 6 • | written by Gerard 2
4 votes
0 replies
781 views
News: Join the online/distributed nf-core Hackathon next week!
nf-core nextflow container workflows bioinformatics
written by Matthias Zepper 524
0 votes
3 replies
1.2K views
Non variants sites of the genome (gVCF file)
non genome variants sites gvcf
updated by LauferVA 497 • | written by heureuse 1
0 votes
1 reply
783 views
Choosing the "right" sequence as an input control
input control chipseq
updated by ATpoint 9.1K • | written by mark.pekarsky 2
0 votes
2 replies
2.4K views
Unable to parse config file
nextflow nf-core pulled form github
updated by Phil Ewels 160 • | written by JieQY 0
0 votes
1 reply
876 views
Seeking Guidance on Selecting Control ChIP Sequences for nf-core/chipseq Pipeline
srr nf-core chipseq
updated by mark.ziemann 199 • | written by mark.pekarsky 2
0 votes
0 replies
704 views
Problem with GSVA output
gsva rnaseq
written by a.stef.44 1
0 votes
2 replies
1.9K views
Using UMI-tools on Smart-seq3 RNA-Seq data
rna-seq umi umi-tools smart-seq3
updated by Ram 4.5K • | written by Agastya 1
0 votes
5 replies
1.5K views
Remove site with only missing data
fasta
updated by Pierre Lindenbaum 17K • | written by Leane 0
0 votes
3 replies
1.6K views
Problems with Seaborn plots in Python
python sns plot
updated by Wayne 208 • | written by egascon 6
0 votes
4 replies
1.8K views
Downloading full list of Homo sapiens genes
genes
written by Nigussie 0
0 votes
1 reply
766 views
How to normalise Nanopore mRNA sequencing data between two cell lines
nanopore rnaseq normalization
updated by lagartija 16 • | written by Mo 5
2 votes
5 replies
5.6K views
Python library for parsing bcftools stats file
bcftools
updated by Pierre Lindenbaum 17K • | written by William 540
0 votes
0 replies
560 views
Manta SV (specially Translocation)
manta structural-variant
updated by Ram 4.5K • | written by Nai 5
0 votes
3 replies
1.6K views
Cytoscape COLOUR EDGES
reulatory cytoscape networks
updated by Scooter 31 • | written by SKY 6
0 votes
3 replies
2.7K views
How to perform PPI network analysis in STRING for newly sequenced bacterial genome ?
proteomics cytoscape network string
updated by bioinfo_enthusiast 0 • | written by Kumar 12
0 votes
0 replies
529 views
How to perform burden test using plink /seq
plink-seq burden-test
updated by Ram 4.5K • | written by aiswaryabioinfo 3
0 votes
3 replies
1.3K views
Higher number of reads mapped to transcriptome vs genome in star mapping
riboseq star bam transcriptome alignment
updated by i.sudbery 2.3K • | written by paguirreazorin 0
0 votes
4 replies
1.4K views
Visualisation of read depth
coverage read-depth variant-calling
updated by Ram 4.5K • | written by AIMAR 7
0 votes
0 replies
601 views
construct PKN
regulatory pkn mouse networks gene
written by rahma.khoualdia 0
0 votes
5 replies
2.5K views
Tool for automatic immune cell annotation in MOUSE?
immune single-cell annotation
written by txema.heredia 31
1 vote
12 replies
8.7K views
How to draw venn diagram for two CNV lists?
venn
updated by 5heikki 1.1K • | written by lyz10302012 49
0 votes
1 reply
851 views
TMM normalized CPM
tpm cpm tmm
updated by ATpoint 9.1K • | written by maryak 2
1 vote
0 replies
869 views
Normlizatiom in DiffBind
diffbind chip-seq
written by Siqi 1
0 votes
1 reply
869 views
Obtain genome coordinates for a DNA sequence using ENSEMBL API
ensembl api
updated by GenoMax 16K • | written by Ishan 0
0 votes
0 replies
1.5K views
Forum: Decoding Corvid Intelligence: Genomics, AI & the Genetics of Cognition
neurogenetics comparative-genomics bioinformatics genomics machine-learning
updated by Ram 4.5K • | written by EvoGenExplorer 0
0 votes
5 replies
1.7K views
GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ from GFA
vg
updated by Jouni Sirén 85 • | written by Sauers 2
1 vote
16 replies
3.2K views
prokka with too many "hypothetical proteins" and genome comparison
comparison genome galaxy prokka
written by avinci1 2
0 votes
1 reply
1.1K views
Split paired ended hWGS FASTq files to simulate difference sequence coverage
whole-genome-sequencing wgs fastq coverage
updated by shelkmike 201 • | written by DJBill 2
0 votes
11 replies
2.3K views
OMA use case
oma omastandalone
updated by GenoMax 16K • | written by nmalexan 0
0 votes
0 replies
975 views
News: Machine Learning for Longitudinal Data with Python – Online Course (6-9 May)
machinelearning longitudinaldata deeplearning omics
written by Physalia-courses 281
0 votes
2 replies
1.4K views
Recommended workflow to pre-process and demultiplex scRNAseq data based on the HTOs and ADTs
adt hto demultiplexing scrnaseq
updated by GenoMax 16K • | written by mete.han.celebi 1
0 votes
3 replies
2.0K views
bwa-mem keeps failing to locate the index files
bwa bwa-mem
updated by ATpoint 9.1K • | written by pairedttest 4
0 votes
5 replies
1.6K views
Efficient Gene Prediction on Large Eukaryotic Genomes
tools prediction gene
updated by Joe 2.2K • | written by Shuo 0
0 votes
0 replies
478 views
Olink - OlinkAnalyze Package - olink_umap_plot function
olink proteomics
written by kristina 0
3 votes
0 replies
26K views
Herald: The Biostar Herald for Wednesday, March 19, 2025
herald
written by Biostar 380
0 votes
1 reply
936 views
Cosmic database update issue in annovar
annovar cosmic genomics
updated by Ahmed 0 • | written by abhijitswain 0
0 votes
1 reply
1.1K views
Transforming diploid GT on male X and Y chromosome to haploid
vcf genotype gvcf
written by Michaela 1
1 vote
3 replies
1.8K views
How do I figure out pangenome location of hg38 coordinates?
pangenome hg38 vg
updated by lushjia 0 • | written by a5864557 1
0 votes
7 replies
2.0K views
How I can curate all exon start-end positions for 50 genes (to create GTF file)?
gtf curation gene
updated by GenoMax 16K • | written by Esra 1
0 votes
0 replies
612 views
generating manhattan plot through hail
plot manhattan hail visualizations gwas
written by nitya 0
0 votes
0 replies
538 views
Hard Filtering Differences between WES and WGS
wes wgs hard-filtering
updated by Ram 4.5K • | written by SIMONE 0
0 votes
3 replies
1.1K views
Am I accounting for replicates correctly in pseudobulk analysis?
deseq2 single-cell pseudobulk
updated by ATpoint 9.1K • | written by Aspire 43
0 votes
4 replies
1.4K views
Is there too little variation to detect meaningful gene changes?
deseq
updated by Istvan Albert 10K • | written by Megan 6
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