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0 votes
0 replies
492 views
Annotate Phylogentic Tree with classes
python tree phylogenetic analysis
written by BIANCA • BIANCA
0 votes
1 reply
769 views
Is it possible for genomic DNA to be sequenced in a modern RNA-seq protocol?
transcriptome genome rna-seq
updated by GenoMax GenoMax • written by predeus predeus
0 votes
3 replies
1.2K views
Picard gives empty value for HS_LIBRARY_SIZE when running CollectHsMetrics
sequencing library picard
written by Bertalan_Takacs • Bertalan_Takacs
0 votes
2 replies
970 views
single cell compositional analysis - how adjusting for covariates (age)
compositional-analysis rna-seq single-cell
written by Francesco • Francesco
0 votes
1 reply
992 views
Differential Expression Analysis of scRNA seq data with Pseudobulking
edger scrnaseq pseudobulking
updated by ATpoint ATpoint • written by Sophia • Sophia
0 votes
0 replies
726 views
News: Last Two Spots Available – R/Bioconductor for Mass Spectrometry & Proteomics
proteomics bioconductor mass-spectrometry r
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
597 views
News: Last-Minute Open Spots for Our RNA-Seq Workshops!
single-cell transcriptomics scrnaseq rnaseq
updated by Ram Ram • written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
2 replies
1.6K views
advice on rooting a tree in R
r tree ggtree phylo
written by Matteo Ungaro • Matteo Ungaro
0 votes
1 reply
622 views
Beagle removed many sites in the target dataset after imputation
genotype beagle imputation
written by LCG • LCG
0 votes
0 replies
667 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study: Application in Immunosenescence
single-cell
written by Novogene • Novogene
0 votes
2 replies
1.9K views
ArchR error Error in grid.Call.graphics(C_downvppath, name$path, name$name, strict): Viewport 'Norm. Enrichment -log10(P-adj) [0-Max]_heatmap_body_1_1' was not found
archr
written by Bioinformatics_16 • Bioinformatics_16
0 votes
5 replies
10K views
normalization to "housekeeping" genes of RNAseq data vs qPCR result
qpcr rnaseq
updated by Conor • Conor • written by cwwong13 • cwwong13
0 votes
12 replies
2.0K views
MD5 Mismatch on chrY When Extracting CRAM Region Despite Correct Reference Genome
reference-genome
updated by GenoMax GenoMax • written by offset • offset
2 votes
8 replies
3.8K views
Normalizing TCR data
analysis
updated by apontel • apontel • written by ruchitkpanchal • ruchitkpanchal
0 votes
1 reply
950 views
Alternative normalization strategy for RNA-seq data with global downregulation
deseq2 rna-seq geneexpression normalization mirna
updated by ATpoint ATpoint • written by Nicolas • Nicolas
0 votes
2 replies
797 views
Extract Fungal mRNA reda from RNASeq Sample
rnaseq rna fungus bbsplit.sh transcriptomics
written by SomeOne • SomeOne
0 votes
0 replies
849 views
cNMF missing spectra iterations - what am I doing wrong?
cnmf python single-cell
written by yura.grabovska • yura.grabovska
0 votes
0 replies
441 views
Repeated sequences
repetitive sequences
written by frarodmar17 • frarodmar17
0 votes
7 replies
1.8K views
Best way to assess relatedness of eukaryotic organisms from sequencing reads?
phylogenomics phylogenetics ngs kmer sequencing
updated by colindaven colindaven • written by Mark • Mark
1 vote
0 replies
541 views
Potential Contamination in ARG Metagenomic Analysis – How to Filter Out Reads?
metagenomics arg
written by JH • JH
0 votes
2 replies
2.0K views
Negative coverage depths when running jgi_summarize_bam_contig_depths (Metabat2)
assembly metagenome metabat
written by amir.rakhimov.b • amir.rakhimov.b
0 votes
0 replies
540 views
How to interpret this RNA-seq multi-peak distribution density plot?
rna-seq distribution
written by Omar • Omar
0 votes
2 replies
1.3K views
Salmon RNA-Seq transcript quantification
salmon rna-seq
updated by Rob Rob • written by Fuat • Fuat
0 votes
0 replies
608 views
News: Course: Comparative Genomics (ONLINE; April 7-11)
comparative-genomics sv snv genome-annotation
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
1.1K views
Discrepancy in GEO2R vs. Raw Data Analysis: Significance of DEGs
raw-data-analysis microarray geo2r probe-ids
updated by ATpoint ATpoint • written by Saeedeh Salehi • Saeedeh Salehi
0 votes
5 replies
1.4K views
DiffBind Normalization ATAC-Seq Question: When to drop a sample?
atac-seq diffbind
written by John • John
0 votes
2 replies
916 views
Freelance career advice
freelance job career
updated by Ram Ram • written by José • José
0 votes
0 replies
494 views
Pathways Logic
logic reactome netlist
written by sciwiseg • sciwiseg
1 vote
2 replies
1.1K views
CNV detection
ressources cnv large_cohort computation
updated by cmdcolin cmdcolin • written by heureuse • heureuse
0 votes
0 replies
402 views
cfRNA-seq data
cfrna-seq
written by frarodmar17 • frarodmar17
0 votes
2 replies
856 views
fastq direction
bioinfo
written by gagi1993 • gagi1993
0 votes
4 replies
1.3K views
Seeking chloroplast and mitochondrial reference for barley
barley chloroplast reference mitochondrial genome
updated by andrew • andrew • written by IrK IrK
1 vote
2 replies
1.2K views
Help with Reproducing Global Bird Migration Flyway Map in R
r flyway map offtopic
updated by Dunois • Dunois • written by Biodeer • Biodeer
7 votes
8 replies
3.1K views
Tool: Fast, flexible grep for very large FASTQ files
grepq grep-like fastq
written by milesforjazz • milesforjazz
1 vote
1 reply
903 views
Changing order of elements on Chord diagram in R
chort chart r diagram plot
updated by kalavattam • kalavattam • written by Jonathan Yoou • Jonathan Yoou
1 vote
3 replies
1.2K views
Using other individuals and related species to improve a de novo genome assembly
illumina
updated by Darked89 Darked89 • written by Ed 991 • Ed 991
0 votes
2 replies
991 views
Sankey plot for unequal node sizes
r sankey network ggplot
written by Luca Arbore • Luca Arbore
0 votes
0 replies
593 views
Best tools for gene regulatory netweork analysis
time-course network transcriptome rna-seq
written by f.tomoyuki • f.tomoyuki
0 votes
4 replies
1.3K views
Pymol semaglutide structure
pymol protein pdb tool structure
written by Hansen_869 • Hansen_869
0 votes
0 replies
587 views
Consensus Peak Shifts after dba_count() and Default Peak Width in DiffBind
diffbind chip-seq
written by Siqi • Siqi
0 votes
1 reply
954 views
Variant Validation Tool for Mouse RNA-seq
mouse variants transcriptome validation
updated by Michael Dondrup Michael Dondrup • written by vireen105 • vireen105
0 votes
3 replies
1.8K views
Ensemble Neural Network - Stacking ensemble neural network accuracy is significantly similar or low compared to base models
neural-network gradient-boosting cox random-forest ensemble
written by Yugan Gogul Muthukumar • Yugan Gogul Muthukumar
0 votes
1 reply
727 views
How to analysed RNA Seq for multiple samples
rna-seq transcriptome
updated by Mark Mark • written by Nikesh • Nikesh
0 votes
5 replies
1.4K views
Transcriptome Variant Calling Mapping to Introns
mouse introns transcriptome alignment variants
updated by i.sudbery i.sudbery • written by vireen105 • vireen105
1 vote
9 replies
2.2K views
How to extract a multiple sequence alignment file from a CRAM file?
samtools cram
updated by cmdcolin cmdcolin • written by Charles Plessy Charles Plessy
0 votes
1 reply
734 views
Can DiffBind Perform Peak Calling and Differential Analysis Directly from BAM Files?
diffbind chip-seq
updated by ATpoint ATpoint • written by Siqi • Siqi
0 votes
6 replies
1.5K views
Dealing with UMIs
umi
written by Ramon • Ramon
0 votes
4 replies
1.7K views
Does sam 2048 flag discriminate secondary from supplementary alignments?
samtools secondary supplementary alignment
updated by GenoMax GenoMax • written by resug • resug
0 votes
1 reply
1.3K views
monocle 3-- Could not get node in small cluster
monocle3
updated by Prakki Rama Prakki Rama • written by synat.keam • synat.keam
0 votes
3 replies
970 views
How to extract CDS from WGS data in rice?
rap-db cds genomics wgs
updated by Mark Mark • written by ChanderKant (CK) Chaudhary • ChanderKant (CK) Chaudhary
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