Hi Guys, I have a FASTQ file containing whole metagenome sequencing Raw Data. Could anyone please suggest a workflow or article for metagenome analysis? I …

Hi everyone This package is to evaluate the metabolism flux in cell by single-cell RNA-seq data. The package required a STOICHIOMETRY MATRIX to perform the …

I have a list of around 1,000 differentially expressed combined set of genes, on which I want to perform **WGCNA** and **PPI network** analysis. Most …

Hi, I have done a WGCNA with all typical graphics. Now, I want to do the network visualization using the adjacency matrix to visualize it, …

Hello all, I wanted to know how beta is determined in order to calculate weighted network adjacency in WGCNA (Weighted correlation network analysis)? Also, if …

Hello All, Does anyone know how to make tripartite network using cystoscope.I have gene-gene network and drug-gene network. I want to integrated these two networks. …

Hi I'm new to RNA-Seq analysis. I ran the following command with cuffdiff: cuffdiff -o /home/silicon/mouse/diff_out -b /home/silicon/mouse/GRCm38/Sequence/Bowtie2Index/genome.fa -p 7 -L g1,g2 -u /home/silicon/mouse/assembly/merged_asm/merged.gtf, \ …

Hi Biostars! I'm trying to do Gene set enrichment analysis (GSEA) using Broad Institute's GSEA tool itself (offline version). So, it is asking me to …

Hi! I try to make SNP network espacially for breast cancer. And I have a data from GWAS central "breast cancer SNP list" To make …

Hi! how can I download all miRNAs host genes in one file please (for network analysis)?