Easiest way to perform WGCNA and PPI network analysis on 1000+ genes and how to visualize?
I have a list of around 1,000 differentially expressed combined set of genes, on which I want to perform WGCNA and PPI network analysis.
Most genes came from this microarray dataset: GSE31243
I don't know how can I perform WGCNA analysis on microarray data or just gene list. Would be great if I can do WGCNA with gene list only.
I also don't know what's the best way to perform protein-protein interaction network analysis on so many genes as well as visualize the interactions.
Please help me achieve this with R programming or any other easier method.
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nahidpatwary1 •
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