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0 votes
1 reply
831 views
Mapping reversion mutations
ngs reversion mutation
updated by Ram 4.5K • | written by reddyraghuveer664 0
2 votes
0 replies
913 views
Issue with Fetching Population Allele Frequency in gnomAD GraphQL API
allelle frequency api graphql gnomad
written by DareDevil 448
0 votes
1 reply
1.3K views
Attempts to demultiplex long reads from .pod5 result in unclassified reads
dorado sequencing long-read demultiplex
updated by GenoMax 16K • | written by Placeholder@12654926 0
0 votes
1 reply
876 views
Issue with BSgenomeForge::forgeBSgenomeDataPkgFromNCBI
r bsgenomeforge bsgenome ncbi
updated by ATpoint 9.1K • | written by noodle 65
0 votes
1 reply
735 views
Batch effect or biological difference
batch-effect
updated by Ram 4.5K • | written by cynthier 0
1 vote
2 replies
1.1K views
Inconsistency between VCF and HGVS
vep
written by Senanu 3
0 votes
1 reply
1.0K views
VCFtools + easySFS snp # discordance
radtags vcftools
updated by Istvan Albert 10K • | written by laurasachica7 0
0 votes
4 replies
4.3K views
Generating Multiple Alignment Format file (Maf)
maf multiple-alignment mafft
updated by Ram 4.5K • | written by roz_safavi 0
0 votes
6 replies
1.8K views
STAR: Paired alignment gets ~18% unmapped (too short), but single reads get >90% mapping
paired-end star rnaseq
written by Davor 0
1 vote
0 replies
1.7K views
Job: bioinformatician position, Ohio State University, Columbus, USA
bioinformatician
updated by GenoMax 16K • | written by ilaria.palmisano 1
0 votes
4 replies
1.4K views
Coverage drop at assembly ends
bowtie2 bw-mem alignment minimap2
updated by GenoMax 16K • | written by alenew.am 1
0 votes
7 replies
2.2K views
How to identify additional SNPs on EPICv2
snps methylation epic
updated by Papyrus 310 • | written by Basti 210
0 votes
1 reply
820 views
jcvi:ValueError: A total of 0 anchor was found. Aborted.
jcvi collinearity
updated by Ram 4.5K • | written by JieQY 0
0 votes
5 replies
1.9K views
SNPcheck alternative
snpcheck
updated by GenoMax 16K • | written by KirGen 3
0 votes
0 replies
621 views
Comparing HMMER vs. HHrepID for LRR Repeat Detection and Boundary Consistency
hmmer repeats
written by jllPons 0
0 votes
0 replies
684 views
circos plot help
visualization snv genomics circos
updated by Ram 4.5K • | written by Genomancer 0
0 votes
3 replies
1.2K views
DAVID List Upload/Gene Conversion Tool
david
updated by Ram 4.5K • | written by b5708137 0
0 votes
2 replies
1.4K views
Can I combine segment results from Sequenza and cnvkit?
cnv sequenza cnvkit
written by Ram 4.5K
0 votes
8 replies
2.1K views
Shotgun dataset with polyG, low qualiity
shotgun-data
written by shevch2009 2
0 votes
2 replies
1.0K views
MAGeCK: Doing two sided test on gene level?
mageck
written by gernophil 15
0 votes
5 replies
1.4K views
Is TETranscripts useful for repetitive sequences analysis?
tetranscripts
updated by Michael Dondrup 5.6K • | written by frarodmar17 4
0 votes
5 replies
1.9K views
SlingShot and Subsetting data
scrna slingshot trajectory
updated by jared.andrews07 1.9K • | written by carolofharvest 6
0 votes
1 reply
1.1K views
Bulk searching UniProt
uniprot
updated by Elisabeth Gasteiger 243 • | written by timothy.kirkwood 14
0 votes
6 replies
2.1K views
Problem with Accession Number Changes in UniProt FASTA Sequences
fasta accession uniprot idmapping
written by bioinfo_enthusiast 0
0 votes
2 replies
1.1K views
PPI Network Analysis of Virulence Genes in Morganella morganii Using STRING Database
ppi string
written by bioinfo_enthusiast 0
2 votes
12 replies
3.1K views
Forum: Reproducibility Crisis
r-bioinformatics
updated by i.sudbery 2.3K • | written by ParastooA 2
0 votes
13 replies
13K views
Getting sample information from GEO
geo ncbi
updated by DareDevil 448 • | written by Tom_L 36
0 votes
3 replies
1.1K views
How to Close a Phage Genome? Issues with PhageTerm and CheckV Completeness
phage genome assembly phageterm
updated by GenoMax 16K • | written by mail2steff 7
0 votes
2 replies
1.2K views
RepBase30.02.fasta.tar.gz
repbase30.02.fasta.tar.gz offtopic
updated by Michael Dondrup 5.6K • | written by jupitoy 0
1 vote
5 replies
2.5K views
CIBERSORTx error (error in rep(2, size * length(cells) -1)) : invalid 'times' argument
deconvolution rna-seq cibersortx cibersort
updated by zhbyrd 0 • | written by Mr. George 1
0 votes
2 replies
1.4K views
Differences in DEG results using RSEM with and without the --strandness reverse
rsem deg star transcriptomic
updated by LauferVA 497 • | written by Emy Alade 4
1 vote
5 replies
2.0K views
Absolute vs. differential gene expression - which analysis is more informative?
differential-gene-expression gene-expression rna-seq
updated by LauferVA 497 • | written by bioinfo1990 1
0 votes
3 replies
1.8K views
making psam file for plink2
plink2
written by dec986 38
0 votes
4 replies
1.2K views
gtf file for canFam2 genome version
gtffile
written by 1769mkc 127
0 votes
2 replies
1.0K views
Bioinformatics
stringdb
updated by Ram 4.5K • | written by ahmad79rezahay 0
0 votes
0 replies
802 views
News: Epigenomics Data Analysis
epigenomics rna-seq atac-seq chip-seq hi-c
written by Physalia-courses 281
0 votes
8 replies
1.9K views
does any licenses needed to make experiments?
offtopic
updated by Dunois 301 • | written by suleyman 0
0 votes
5 replies
1.4K views
Strange overrepresented sequence
fastqc adapter rnaseq
written by georomano 0
4 votes
6 replies
8.1K views
Add metadata based on tree structure
r ggtree
updated by rsieber 1 • | written by Jack 5
0 votes
3 replies
827 views
Normalize RNAseq data on RT-dPCR or RT-qPCR
rnaseq
updated by ATpoint 9.1K • | written by lagartija 16
0 votes
2 replies
1.0K views
Is there a way to import a large amount of regions of interest into IGV
sequencing igv genomics ngs
updated by GenoMax 16K • | written by Mark 6
0 votes
10 replies
2.2K views
Question about an alignment
ces sequencing alignment
written by barslmn 245
0 votes
2 replies
891 views
Arioc (read mapping) ref sequence length error
mapping gpu arioc read
written by Michael 0
0 votes
0 replies
738 views
When I want to compare two groups at multiple time points in scRNA-seq datasets, the criteria for the genes to be analyzed
seurat scrna-seq
written by Apprentice 19
0 votes
6 replies
2.1K views
Heatmap problem in R
r heatmap
written by ParastooA 2
0 votes
4 replies
1.4K views
Bacterial VCF file annotation using snpEff error
snpeff
written by 1769mkc 127
0 votes
4 replies
2.4K views
Coverage depth using samtools
samtools ngs depth sequencing coverage
written by slzr_ 1
0 votes
4 replies
1.4K views
MarkDuplicates RNASeq: A few samples look weird. What could be the cause?
qc markduplicates picard rnaseq
updated by GenoMax 16K • | written by Davor 0
0 votes
2 replies
953 views
Data Integrity (NCBI SRA and TCGA)
clinic metadata
updated by Zhenyu Zhang 130 • | written by umarfaruksahin 0
0 votes
0 replies
1.9K views
concatenating 2 differently-imputed VCF files then filtering by imputation score to keep the higher imputation score imputed vaiant from duplicate variants
imputation filtration score duplicate variants
written by SalmaElShafie 0
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