This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
2 replies
1.1K views
Why protein sequence from AUGUSTUS can't find in blast
genome augustus galaxy annotation
written by Jl • Jl
0 votes
2 replies
1.1K views
How to make amazing UMAP to spatialPlot GIF
umap spatial
written by noodlejackson • noodlejackson
0 votes
1 reply
706 views
Software for visualizing mass spectromety spectra
ms mass spectrometry
updated by Joe Joe • written by emalekos • emalekos
0 votes
1 reply
558 views
Detecting Aneuploidy from Bulk RNA-Seq Data
aneuploidy rna-seq
updated by ATpoint ATpoint • written by bioinfo1990 • bioinfo1990
0 votes
0 replies
673 views
GSA genome studio call rate calculation issues
genome gsa studio
written by 1769mkc 1769mkc
0 votes
2 replies
1.4K views
Parsing BAM file per cell from Smart-Seq2 dataset
starsolo star bam smartseq2 alignment
updated by dsull dsull • written by brutonk • brutonk
0 votes
0 replies
858 views
News: Spring School in Bioinformatics - online, March 31 to April 4
singularity ngs rnaseq phylogenomics docker
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.1K views
Gene Expression Timeline Analysis for N=1
analysis gene expression
written by ATRX ATRX
0 votes
1 reply
1.4K views
Interactive UMAP for scRNA-seq Data
html rmarkdown interactive-umap scrna-seq
updated by S • S • written by s • s
0 votes
0 replies
681 views
Converting PLINK GWAS Summary Statistics (--glm) to BED Format for UCSC Liftover
plink liftover plink2 bed gwas
written by Mllepnos • Mllepnos
4 votes
0 replies
940 views
Tool: PAN-GO Functionome: known functions of all human protein-coding genes
goenrichment function go goterms geneontology
written by geneontologyhelp • geneontologyhelp
0 votes
1 reply
1.0K views
How to clarify results from an HLA association analysis - Omnibus tests/HATK/other options
omnibus hla hatk gwas regression
updated by grover.sandeep • grover.sandeep • written by s.may-wilson • s.may-wilson
0 votes
0 replies
829 views
News: Multi-Omics Integration with Machine Learning — Online Course!
machine-learning multi-omics depp-learning data-integration bigdata
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.0K views
Alignment algorithm for DNA sequencing
sequencing data dna
updated by ATpoint ATpoint • written by QX • QX
0 votes
1 reply
993 views
RepeatMasker UCSC track
repeatmasker
updated by Michael Dondrup Michael Dondrup • written by frarodmar17 • frarodmar17
0 votes
0 replies
742 views
rarefaction curve metagenomic reads show species saturation around 100 000 reads
metagenomics rarefaction kraken2
written by rDNA • rDNA
0 votes
4 replies
2.3K views
Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argument
cibersortx
updated by jared.andrews07 jared.andrews07 • written by Pumla • Pumla
0 votes
22 replies
19K views
BLAST Database error: Database memory map file error
makeblastdb
updated by goubert.clement • goubert.clement • written by Martina • Martina
0 votes
2 replies
900 views
Looking up gene name from mRNA ID using biomaRt
r mrna biomart
updated by Ram Ram • written by Khôi • Khôi
0 votes
0 replies
527 views
Interpreting negative gap length in MUMMER4
mummer translocation
written by cedric.blais • cedric.blais
0 votes
0 replies
574 views
Uncertainty about deepTools computeMatrix options for RNA modifications
deeptools metagene computematrix
written by Kyle • Kyle
0 votes
0 replies
668 views
News: Live Online Course: Introduction to Python, April, 2025
python programming course
written by soledad.esteban • soledad.esteban
2 votes
6 replies
1.8K views
Multiple factors in DESeq2
deseq2
written by noodlejackson • noodlejackson
2 votes
2 replies
1.0K views
Why do RNAseq reads align to non-gene regions of the bacterial genome?
rnaseq transcription
updated by i.sudbery i.sudbery • written by Texx • Texx
0 votes
1 reply
1.1K views
Confused about discovering novel genes in a model organism using STAR, Trinity, and reference genomes
star trinity rnaseq
updated by Ram Ram • written by zizigolu zizigolu
0 votes
7 replies
1.8K views
nanopore variant calling
pacbio long-read nanopore
updated by colindaven colindaven • written by Meghan.T • Meghan.T
0 votes
3 replies
1.3K views
enrichGo problem
enrichgo
updated by Arup Ghosh Arup Ghosh • written by mimijane1664 • mimijane1664
0 votes
4 replies
1.3K views
Seeking Help for Reanalysis of Raw WES Data
wes
updated by Jeremy Leipzig Jeremy Leipzig • written by lidia.manczak • lidia.manczak
0 votes
8 replies
1.6K views
Biscuit Alignment and Index failed - WGBS - Bisulfite analysis
bwa biscuit bisulfite
updated by Ram Ram • written by Palanikumar.Palanichamy • Palanikumar.Palanichamy
0 votes
3 replies
1.2K views
illumina: Adapter Confusion
illumina adapter
updated by GenoMax GenoMax • written by lingjun meng • lingjun meng
0 votes
5 replies
1.6K views
Identifying primer sequences from raw FASTQ files
primers
written by Chandini • Chandini
0 votes
7 replies
2.6K views
HTSlib threads when ingesting large bgzipped FASTA
htslib samtools bgzip c
updated by aw7 • aw7 • written by Oleksii • Oleksii
0 votes
3 replies
1.2K views
question for dowloading Protein fasta sequence by edirect using while
edirect
updated by vkkodali_ncbi vkkodali_ncbi • written by 诗友 • 诗友
1 vote
2 replies
1.3K views
Validate RNAseq Models in Microarray Data?
microarray rnaseq coxlasso fpkm
updated by ATpoint ATpoint • written by vitor • vitor
0 votes
0 replies
571 views
Restrict anlaysis of WGS VCF file to Refseq Select using snpeff
refseq vcf wgs
written by Gabriel • Gabriel
0 votes
2 replies
941 views
Novel genes in model organisms
homologue genome gene
written by zizigolu zizigolu
0 votes
1 reply
913 views
Understanding sctransform
sctransform seurat
updated by Bastien Hervé Bastien Hervé • written by Deepak Tanwar Deepak Tanwar
0 votes
1 reply
1.4K views
Subset reads based on Phred-score ranges
phred sequencing ngs
updated by GenoMax GenoMax • written by Mark • Mark
0 votes
3 replies
1.4K views
Reasoning - Why is it invalid to compare ratios of TPMs?
rnaseq analysis expression normalization differential tpm batch effect
updated by ATpoint ATpoint • written by VTh • VTh
0 votes
2 replies
1.3K views
DEGs Analysis For a Microarray Data that has one biological replicates per cell line in each condition
analysis degs microarray
written by mete.han.celebi • mete.han.celebi
0 votes
6 replies
1.6K views
The soapdenovo2 genome assembly is highly fragmented - learning genome assembly with public data
gene soapdenovo2 assembly
updated by lieven.sterck lieven.sterck • written by JieQY • JieQY
2 votes
3 replies
1.8K views
VCF filtering with Allele Balance (AB) using FilterVcf (Picard)
allele-balance filtervcf picard gatk
updated by GokalpC • GokalpC • written by Eduardo • Eduardo
0 votes
4 replies
1.5K views
Haplotype analysis
founder haplotype-analysis
written by disha3786 • disha3786
0 votes
4 replies
1.3K views
Indica rice genome and annotation files
rnaseq
updated by ChanderKant (CK) Chaudhary • ChanderKant (CK) Chaudhary • written by chandimaa • chandimaa
0 votes
6 replies
1.9K views
Question: Making primers for cloning and transfection
transfection cloning primer pcr gene
updated by jared.andrews07 jared.andrews07 • written by Lu Adr • Lu Adr
0 votes
0 replies
669 views
Help with the interpretation of Silhouette width averaging
clustering kmeans cluster silhouettemethod
written by Maria Jose • Maria Jose
0 votes
1 reply
1.6K views
Job: Open Rank Tenure-earning Faculty in the Department of Biostatistics & Bioinformatics
cancer oncology tenure-earning faculty bioinformatics
updated by GenoMax GenoMax • written by maritza.garcia-saavedra • maritza.garcia-saavedra
0 votes
1 reply
1.5K views
Job: Open Rank Tenure-earning Faculty in the Department of Biostatistics & Bioinformatics
oncology faculty leadership
updated by GenoMax GenoMax • written by maritza.garcia-saavedra • maritza.garcia-saavedra
0 votes
2 replies
875 views
Pre-Alignment process
read_depth_measure
written by AIMAR • AIMAR
0 votes
0 replies
698 views
Differential methylation analysis using Dorado
dorado m6a drs nanopore
written by baibhu1234 • baibhu1234
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