Entering edit mode
7.4 years ago
roz_safavi
•
0
Hello,
I have 3 fasta files which I'd like to perform multiple alignment on them and generate "Multiple Alignment Format" output. I was wondering if anyone knows how to do that? I was thinking about Mafft, but Mafft does not produce maf output.
Best, Rojin
I'm working on relatively short sequences right now ( around 200) but this is my test set. Later I'm gonna apply the pipeline to larger sequences around 1k-5k. I was thinking about that, but Last does not do multiple laingmnet (>2 sequences), correct?
Do you have a specific need for MAF format alignments?
Yes, I need to have a maf format so that I can use maf2hal tool to convert maf to hal format