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0 votes
4 replies
1.8K views
PCA plots in ATAC-seq replicates: Is it okay to use vst transformed data for visualization?
atac-seq diffbind
updated by ATpoint 9.1K • | written by maplewj 2
0 votes
1 reply
971 views
Question about `vg construct`
vg
updated by Jouni Sirén 85 • | written by zhengluo 0
0 votes
0 replies
671 views
How can I use mcmcglmm to calculate whether two traits are correlated?
glmm statistics evolution
written by 雨 2
0 votes
3 replies
2.0K views
DiffBind normalization error: invalid argument type (list) - cannot make it work, everything seems correct
normalization deseq2 chipseq diffbind
written by buffealo 13
0 votes
8 replies
3.3K views
FastQC on nanopore data: high proportion of polyA and polyG. Why ?
fastqc polyg ont nanopore polya
updated by lieven.sterck 1.6K • | written by Matt 0
76 votes
32 replies
35K views
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
rna-seq
updated by Paulo 1 • | written by Istvan Albert 10K
0 votes
4 replies
1.3K views
News: Wolfram tech for bio data analysis
plots statistics databases ai
written by dk7258859 0
0 votes
2 replies
972 views
MULTIQC for miRNAseq data
multiqc
written by Alana Conceição Maia Lessa 0
0 votes
1 reply
1.4K views
How to improve the mapping rate of vg giraffe
vg
updated by colindaven 844 • | written by gulin 1
0 votes
6 replies
1.7K views
miRNA-seq normalization
mirdeep2 normalization rna-seq mirna-seq mirna
written by paulanavarrete116 0
0 votes
2 replies
1.4K views
Issues with vg surject into paths
vg
updated by GenoMax 16K • | written by Rugare 0
1 vote
12 replies
3.0K views
Batch correction RNA-seq analysis
rna-seq combat-seq batch correction
updated by LauferVA 497 • | written by ka132 1
0 votes
2 replies
1.0K views
DEG analysys using pseudobulk from single cell RNA-seq
deg scrna-seq
written by Diego 11
0 votes
1 reply
968 views
Microarray platform probrID to Circ-ID problem
circrna microarray
updated by GenoMax 16K • | written by ParastooA 2
0 votes
4 replies
1.1K views
Checking sex of a sample with sequencing data
atac-seq
written by xqyn 6
0 votes
5 replies
1.6K views
Depth in Cram file does not match depth in VCF file
igv of depth snv coverage
updated by Istvan Albert 10K • | written by shu8 0
0 votes
1 reply
973 views
Tools for clustering genes rather than samples for bulk RNA-seq
time bulk rna-seq course clustering
updated by i.sudbery 2.3K • | written by ATS 1
0 votes
2 replies
1.2K views
what database should I use for de novo genome in AUGUSTUS
genome augustus galaxy annotation
updated by lieven.sterck 1.6K • | written by Jl 1
0 votes
8 replies
1.9K views
Is there a tool to obtain GO terms for thousands of genes at once?
permutations genes
updated by GenoMax 16K • | written by Ana 1
0 votes
1 reply
686 views
cant make the correct matrix
logfc csv
updated by lieven.sterck 1.6K • | written by Naila 0
0 votes
4 replies
1.8K views
FIxing Gene Models in Funannotate
genomics funannotate fungus annotation
written by SomeOne 33
0 votes
7 replies
1.9K views
How to Make Cell Order identical Between Two Seurat Objects in R?
r seurat scrna-seq
updated by yura.grabovska 94 • | written by zhang616123 0
0 votes
3 replies
1.2K views
Assign different color in same section of Chord diagram in R
chart r diagram plot chord
updated by Bastien Hervé 680 • | written by Jonathan Yoou 7
0 votes
0 replies
744 views
News: Live Online course: Introduction to Python, April, 2025
python programming course
written by soledad.esteban 1
0 votes
4 replies
1.2K views
Niormalization process in creating heatmap
z heatmap score normalization
updated by ATpoint 9.1K • | written by ZuelTech 0
0 votes
14 replies
2.6K views
Lacking exons in gtf file of a virus' genome
gtf exon mapping hazara virusgenome
updated by colindaven 844 • | written by ZuelTech 0
0 votes
4 replies
3.6K views
Should I process two complete sets of 10x single-cell multiomics sequencing files from one donor together or separately?
10x_multiome encode cellranger_arc
updated by swbarnes2 1.5K • | written by Wu-Sheng Zhang 1
0 votes
4 replies
1.2K views
Count matrices plotting
count matrix scanpy
written by NIkita 0
0 votes
8 replies
1.8K views
Filter snRNA-seq .fastq files based on barcodes
snrna-seq scrna-seq fastq bbmap
updated by GenoMax 16K • | written by connorjfausto 3
0 votes
1 reply
968 views
Defining Sex Chromosomes in PLINK for a Camel Genome
plink vcf
updated by chrchang523 1.1K • | written by Smilesky 0
0 votes
0 replies
472 views
Why is the IC50 of the low-risk group always lower than that of the high-risk group?
oncopredict
written by nuorain 4
0 votes
0 replies
919 views
News: Introduction to Epigenomics course
epigenomics rna-seq atac-seq chip-seq hi-c
written by Physalia-courses 281
0 votes
2 replies
1.1K views
Remove batch effect RnaSeq (RUVg)
ruvg batch rnaseq remove
written by aLex97 1
0 votes
0 replies
624 views
Annotation of CpG, DMRs and DMPs with MethylKit and Genomation in R
dmp methylkit dmr cpg
written by egascon 6
1 vote
0 replies
843 views
Tool: A rust binding for pairwise/multiple sequence aligner: bsalign-rs
bsalign alignment
written by dwpeng 14
0 votes
2 replies
970 views
Perform DEGs with pyDESeq2 in CCLE Melanoma Data But Contains Negative Values
deg ccle melanoma pydeseq2
written by mete.han.celebi 1
0 votes
0 replies
417 views
energy minimisation
energy
updated by Pierre Lindenbaum 17K • | written by swarnadurga66666m 0
0 votes
1 reply
748 views
How to concatenate different domains in the target database identified by hmmsearch
multiple domains hmmsearch
updated by GenoMax 16K • | written by Yongjie Zhang 11
0 votes
1 reply
743 views
How to filter Hmmsearch alignment
hmmsearch
updated by Mensur Dlakic 3.0K • | written by Yongjie Zhang 11
0 votes
3 replies
4.7K views
Defining residues as buried or exposed based in ASAs/RSAs
structural-bioinformatics protein-biology
updated by Dan A 0 • | written by Agenor Neto 1
0 votes
1 reply
2.3K views
Understanding Re-use of Query Sequences in Long Read Alignments
alignment pacbio pbmm2 minimap2
updated by LauferVA 497 • | written by Charles-Alexandre Roy 9
0 votes
2 replies
1.3K views
Discrepancy between BAM and vcf
discrepancy vcf dragen
updated by Istvan Albert 10K • | written by louis-gil 0
0 votes
1 reply
1.6K views
Question about `vg giraffe`
vg
updated by GenoMax 16K • | written by zhengluo 0
0 votes
2 replies
1.4K views
Difference in mapping rate when aligned with mapper.pl of miReep2 and bowtie1
small-rnaseq mirnaseq bowtie mirdeep2
updated by LINHUI 0 • | written by MIKA 0
0 votes
3 replies
1.8K views
How to align library of highly similar sequences
mpra variant alignment bwa snv
written by rustyshackleford 0
0 votes
3 replies
3.3K views
How to introduce normalized and scaled seurat data into monocle 3?
monocle scrna-seq seurat
updated by Bastien Hervé 680 • | written by Sun 0
0 votes
1 reply
885 views
Reannotation of complete bacterial genome sequence
re-annotation genome whole automated
updated by Juke34 949 • | written by csag6433 0
0 votes
2 replies
1.9K views
What are the best tools for quantifying allele-specific expression from bulk RNA-seq data these days?
ase phaser allele gene gatk
updated by GenoMax 16K • | written by Paulo 1
1 vote
4 replies
6.1K views
Lift over of GWAS summary stat file from Hg38 to Hg19
hg38 linux liftover gwas hg19
updated by Mllepnos 0 • | written by AVA 4
0 votes
3 replies
1.7K views
How do I install Terminal on Windows?
terminal
updated by 5heikki 1.1K • | written by phyms 0
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