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1 vote
0 replies
860 views
Normlizatiom in DiffBind
diffbind chip-seq
written by Siqi • Siqi
0 votes
1 reply
858 views
Obtain genome coordinates for a DNA sequence using ENSEMBL API
ensembl api
updated by GenoMax GenoMax • written by Ishan • Ishan
0 votes
0 replies
1.5K views
Forum: Decoding Corvid Intelligence: Genomics, AI & the Genetics of Cognition
neurogenetics comparative-genomics bioinformatics genomics machine-learning
updated by Ram Ram • written by EvoGenExplorer • EvoGenExplorer
0 votes
5 replies
1.7K views
GBWT Construction Error: "Sources X and Y both have node Z" When Building GBZ from GFA
vg
updated by Jouni Sirén Jouni Sirén • written by Sauers • Sauers
1 vote
16 replies
3.2K views
prokka with too many "hypothetical proteins" and genome comparison
comparison genome galaxy prokka
written by avinci1 • avinci1
0 votes
1 reply
1.1K views
Split paired ended hWGS FASTq files to simulate difference sequence coverage
whole-genome-sequencing wgs fastq coverage
updated by shelkmike shelkmike • written by DJBill • DJBill
0 votes
11 replies
2.3K views
OMA use case
oma omastandalone
updated by GenoMax GenoMax • written by nmalexan • nmalexan
0 votes
0 replies
968 views
News: Machine Learning for Longitudinal Data with Python – Online Course (6-9 May)
machinelearning longitudinaldata deeplearning omics
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.4K views
Recommended workflow to pre-process and demultiplex scRNAseq data based on the HTOs and ADTs
adt hto demultiplexing scrnaseq
updated by GenoMax GenoMax • written by mete.han.celebi • mete.han.celebi
0 votes
3 replies
1.9K views
bwa-mem keeps failing to locate the index files
bwa bwa-mem
updated by ATpoint ATpoint • written by pairedttest • pairedttest
0 votes
5 replies
1.6K views
Efficient Gene Prediction on Large Eukaryotic Genomes
tools prediction gene
updated by Joe Joe • written by Shuo • Shuo
0 votes
0 replies
469 views
Olink - OlinkAnalyze Package - olink_umap_plot function
olink proteomics
written by kristina • kristina
3 votes
0 replies
26K views
Herald: The Biostar Herald for Wednesday, March 19, 2025
herald
written by Biostar Biostar
0 votes
1 reply
919 views
Cosmic database update issue in annovar
annovar cosmic genomics
updated by Ahmed • Ahmed • written by abhijitswain • abhijitswain
0 votes
1 reply
1.1K views
Transforming diploid GT on male X and Y chromosome to haploid
vcf genotype gvcf
written by Michaela • Michaela
1 vote
3 replies
1.8K views
How do I figure out pangenome location of hg38 coordinates?
pangenome hg38 vg
updated by lushjia • lushjia • written by a5864557 • a5864557
0 votes
7 replies
2.0K views
How I can curate all exon start-end positions for 50 genes (to create GTF file)?
gtf curation gene
updated by GenoMax GenoMax • written by Esra • Esra
0 votes
0 replies
606 views
generating manhattan plot through hail
plot manhattan hail visualizations gwas
written by nitya • nitya
0 votes
0 replies
531 views
Hard Filtering Differences between WES and WGS
wes wgs hard-filtering
updated by Ram Ram • written by SIMONE • SIMONE
0 votes
3 replies
1.1K views
Am I accounting for replicates correctly in pseudobulk analysis?
deseq2 single-cell pseudobulk
updated by ATpoint ATpoint • written by Aspire Aspire
0 votes
4 replies
1.4K views
Is there too little variation to detect meaningful gene changes?
deseq
updated by Istvan Albert Istvan Albert • written by Megan • Megan
0 votes
5 replies
1.5K views
nanopore SNV callers returns empty VCF
snv_caller nanopore
updated by Istvan Albert Istvan Albert • written by Meghan.T • Meghan.T
13 votes
3 replies
3.9K views
Tutorial: Avoiding the Pitfalls of the Anaconda License: A Practical Guide
conda anaconda license
written by Juke34 Juke34
0 votes
2 replies
917 views
How many cells are needed in subcluster to draw conclusions?
immunology t-cells scrna-seq
written by S • S
0 votes
2 replies
1.0K views
Question about assigning gene names, tximport and DESeq2
tximport deseq2
written by bioinfo • bioinfo
0 votes
3 replies
1.6K views
RNASeq: Confused about adapters with barcodes and seq company's filtering
atria rnaseq adapter-trimming
updated by GenoMax GenoMax • written by Davor • Davor
1 vote
2 replies
1.4K views
VEP won't show symbols for all variants; SnpEff will, but won't for others
vep snpeff
updated by Jeremy Leipzig Jeremy Leipzig • written by mary.v.volkova • mary.v.volkova
0 votes
2 replies
895 views
How to plot LMER estimate values in heatmap ?
cell scrnaseq tf lmer transcription
written by carolofharvest • carolofharvest
1 vote
2 replies
2.1K views
News: Final Call - Next-Generation Sequencing Data Analysis: A Practical Introduction (April 2-4 in Munich) - Only 2 seats left
workshop rnaseq variant-calling illumina dnaseq
written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
1 reply
848 views
Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Analysis
tehnical-replicates deseq2 rna-seq
updated by Ram Ram • written by hellothere • hellothere
0 votes
3 replies
1.4K views
Can anyone help me download the dbSNP data for Bos taurus ARS-UCD1.3?
gwas genetics wgs
updated by Ram Ram • written by K • K
0 votes
1 reply
963 views
Co-expression analysis of miRNAs and target mRNAs
mirna targets co-expression mirna-mrna
updated by i.sudbery i.sudbery • written by baibhu1234 • baibhu1234
0 votes
0 replies
523 views
Beagle Imputation
beagle imputation
written by mahlet.teka • mahlet.teka
0 votes
0 replies
585 views
Issue with bam-readcount and fpfilter.pl: Saying "failed to get readcounts for variant allele"
bam-readount somaticsniper
updated by Pierre Lindenbaum Pierre Lindenbaum • written by 1phamcha2 • 1phamcha2
2 votes
2 replies
1.3K views
miRNA-seq: QC reports and workflow
mirna-seq ion-torrent rna-seq fastqc
written by omicon • omicon
1 vote
0 replies
555 views
How to Run Large-Scale Foldseek Comparisons (Human vs. C. elegans)
c.elegans foldseek genes orthologs homologs
written by bioinformatics_rk • bioinformatics_rk
0 votes
1 reply
1.5K views
Recommendations for Reference-guided de novo assembly assembly approaches or pipelines?
ont assembly wgs nanopore genomics
updated by shelkmike shelkmike • written by Mark • Mark
0 votes
1 reply
841 views
Per Base Sequence Content FastQC
rna-seq quality-control
updated by shelkmike shelkmike • written by Ariadna • Ariadna
0 votes
2 replies
1.2K views
Seeking Advice on Handling Multiple Datasets for Differential Analysis in Transcriptomics
data-integration differential-analysis transcriptomics data-normalization
written by Riley J • Riley J
0 votes
3 replies
1.4K views
Population genetics with mutect2 data
haplotypecaller mutect2
updated by LauferVA LauferVA • written by slzr_ • slzr_
0 votes
2 replies
877 views
ggplot of two data set with different colors
geom_line scale_colour_manual ggplot2
updated by Watermelon • Watermelon • written by gogeni5529 • gogeni5529
0 votes
2 replies
807 views
Gene to use for phylogenic analysis
phylogenic-analysis
updated by Ram Ram • written by uttkarsh • uttkarsh
0 votes
0 replies
500 views
Chrom3D
chrom3d interchromosomal genome model
written by desptsp • desptsp
0 votes
1 reply
759 views
Scanpy use with reticulate in R : var_group_positions argument set up
r reticulate scanpy
written by ZheFrench ZheFrench
0 votes
3 replies
1.2K views
CPTAC Data analysis
cptac proteomics
updated by LauferVA LauferVA • written by jain72744 • jain72744
29 votes
13 replies
46K views
hg19 Centromere Position and Chromosome Length
centromere ucsc
updated by Ram Ram • written by Jdk • Jdk
0 votes
3 replies
1.3K views
How to Process Multiple SRRs for the Same BioSample ?
geo rna-seq ncbi mirnas rna
updated by GenoMax GenoMax • written by omicon • omicon
0 votes
3 replies
1.5K views
Methylation cpg probes annotation
annotation methylation cpg tcga
updated by GenoMax GenoMax • written by jain72744 • jain72744
0 votes
2 replies
1.4K views
How to convert .ab1 to fastq
fastq
updated by size_t • size_t • written by dr.suvarnakapale • dr.suvarnakapale
0 votes
1 reply
640 views
How to deal with missing annotations in RNASeq data?
eggnogmapper rnaseq
updated by dthorbur dthorbur • written by v.berriosfarias • v.berriosfarias
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