Software for visualizing mass spectromety spectra
I have some publicly available LC-MS/MS data that I've matched to peptide sequences. Is there a friendly tool for generating mass spec plots for a handful of matches for publication?
I have files in MGF (input) and MZID (MGSF+ output) format.
Ideally, I could upload to an online portal that would a chosen spectra and overlay it with a theoretical peptide spectra. I would like to avoid coding if possible, but open to it if there is nothing better.
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Not my area of expertise at all, but the 2 tools I have used in the past are
Scaffold(https://www.proteomesoftware.com/products/scaffold-5) andperseus(https://maxquant.net/perseus/).the latter I think is free, but I don't think Scaffold is