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0 votes
0 replies
665 views
I woudl ike to understnad how to set the aucMaxRank value for my data set
aucell aucmaxrank
written by gogeni5529 9
0 votes
1 reply
762 views
Issue with Package installation in R.
r gcc
updated by GenoMax 16K • | written by harsh 2
3 votes
4 replies
2.0K views
Phased haplotype using WGS data from Nebula Genomics and GATK
phased nebula haplotype wgs gatk
updated by colindaven 844 • | written by biostars 3
0 votes
1 reply
761 views
IGV view for Chromatin accessibility ATAC-seq
atac-seq
updated by ATpoint 9.1K • | written by Vxike 0
2 votes
2 replies
2.8K views
How to interpret Nucleosome banding pattern in scATAC-Seq?
single-cell scatac-seq signac transcriptomics
updated by Jan 0 • | written by patelk26 34
1 vote
2 replies
1.2K views
WGCNA blockwiseModules function for small datasets
wgcna blockwisemodules
written by ATS 1
0 votes
4 replies
1.1K views
How to add GFP in STAR reference?
star
updated by GenoMax 16K • | written by bioinfo 19
0 votes
0 replies
889 views
News: Population Genomics Using Ancient DNA Data course
demographicmodels populationgenomics adna genomics
written by Physalia-courses 281
0 votes
1 reply
695 views
Can you compare GETx and TCGA miRNA non normalized counts a
comapre to how
updated by ATpoint 9.1K • | written by radwa_noreen 0
0 votes
3 replies
1.1K views
ATAC-seq analysis
atac-seq samtools sorting
updated by ATpoint 9.1K • | written by sk_24 2
0 votes
1 reply
558 views
Learn tNGS
tngs
updated by GenoMax 16K • | written by hang 0
0 votes
3 replies
1.4K views
Server Requirements for long read data analysis
longreadserver longreadanalysis serverrequirements server
updated by colindaven 844 • | written by genomics_student 0
0 votes
1 reply
1.5K views
The molecular signatures database (MSigDB) in R
msigdb
updated by marco.barr 22 • | written by Kelly 2
2 votes
3 replies
1.4K views
plotProfile Errors of DiffBind
diffbind
written by lijiangres 4
0 votes
0 replies
1.5K views
Job: Lab Head positions at the WEHI, Melbourne Australia
labhead australia jobposting
written by Gordon Smyth 916
0 votes
0 replies
667 views
Merging single ATAC seq data sets from multiple sample
10x
written by 1769mkc 127
0 votes
3 replies
1.3K views
GSEA analysis in R
r ranked_list gsea
updated by ATpoint 9.1K • | written by rajdeepboral00 7
0 votes
8 replies
1.9K views
Use taxdb tp get scientific names in local BLAST output
taxdb sscinames taxonomy makeblastdb blast
updated by GenoMax 16K • | written by Luca Arbore 1
0 votes
7 replies
4.4K views
Search all SRA data for sequence? Raw reads only
sra ncbi raw reads fastq
updated by Wayne 208 • | written by poppersrules 1
0 votes
2 replies
1.7K views
Forum: Is this Rosalind inspired project actually useful?
python code-review
written by Andrew 1
0 votes
1 reply
691 views
Subset a GAM (graph alignment) file
pangenome vg vgteam
updated by GenoMax 16K • | written by Pau 0
0 votes
0 replies
697 views
News: Reproducibility in Bioinformatics course
conda singularity docker snakemake nextflow
written by Physalia-courses 281
1 vote
0 replies
822 views
Any tips for optimizing an all vs all alignment with minimap2
mapping nanopore genomics minimap2
written by Mark 6
0 votes
0 replies
630 views
Mismatch in orthology results from local alignment and phylogenetic analysis.
alignment local phylogeny global
updated by GenoMax 16K • | written by Shakunthala Natarajan 2
0 votes
2 replies
975 views
How to automate blasting contigs?
assembly contig blast wgs
written by marongiu.luigi 79
0 votes
0 replies
600 views
Are there tools to find differences in biochemical pathways between organisms?
biochemistry pathways differential
updated by Ram 4.5K • | written by marongiu.luigi 79
0 votes
0 replies
607 views
DiffBind plot.profile error
diffbind biocparallel
written by this_is_me_trying 0
0 votes
3 replies
1.8K views
News: 9th Berlin Summer School in NGS Data Analysis 2025 (June 30 - July 4, 2025) -- FINAL CALL --
workshop rna-seq transcriptomics variantcalling dna-seq
written by ecSeq Bioinformatics 9
0 votes
3 replies
2.0K views
Random seed in scanpy
scanpy scrnaseq single-cell
updated by ATpoint 9.1K • | written by bioinfo 19
0 votes
1 reply
1.0K views
How to obtain the nodes in the graph corresponding to the variant in VCF
vg
updated by agis.maulana12 0 • | written by Wenhai 0
2 votes
4 replies
1.1K views
miRNA Quantifiaction Tool
quatification mirna
updated by GenoMax 16K • | written by anthony.santana.703.j 3
0 votes
3 replies
1.5K views
WGCNA pickSoftThreshold problem
picksoftthreshold question problem wgcna
updated by LChart 518 • | written by ton_of_questions 0
0 votes
1 reply
760 views
Is comparing seeds sufficient, or should alignments be compared instead?
readmapping
updated by shenwei356 870 • | written by curiousfellow@123 0
3 votes
2 replies
1.4K views
How to download protozoa reference genomes from NCBI
genomes ncbi
updated by colindaven 844 • | written by anna 7
1 vote
1 reply
860 views
Clustering on Big data (100 million samples)
clustering data learning big machine
updated by Mensur Dlakic 3.0K • | written by Rushikesh 1
3 votes
7 replies
3.6K views
Where can I find a vcf file with individuals in it, that have a specific disease?
phenotype vcf
updated by edu123updates 0 • | written by Patrick 3
0 votes
2 replies
1.6K views
ERROR::INVALID_TAG_NM:Record A, Read name B, NM tag (nucleotide differences) in file [0] does not match reality [1]
bwa
written by curious 90
2 votes
11 replies
3.5K views
Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
macs2 cutandrun chipseq
updated by jared.andrews07 1.9K • | written by sk 2
0 votes
0 replies
1.4K views
Job: Ensembl Genebuild Project Leader, EMBL-EBI, Hinxton near Cambridge, UK
ensembl jobs
updated by GenoMax 16K • | written by A@Ensembl 3
0 votes
2 replies
856 views
tools to increase hi-c resolution
resolution hi-c
written by J.F.Jiang 93
2 votes
2 replies
988 views
How to fix this this tangle in my bacterial genome assembly
misassembly assembly genomics ngs
written by Mark 6
0 votes
4 replies
2.2K views
Help configuring RepeatMasker
human illumina libraries repeatmasker
updated by Michael Dondrup 5.6K • | written by María José 1
0 votes
2 replies
812 views
How to process Iso-Seq files in SRA public fastqs
iso-seq
written by Abieskawa 2
3 votes
19 replies
11K views
ACMG assignment tools
wes acmg wes wgs
updated by Prash 32 • | written by Eugene A 19
0 votes
0 replies
654 views
Colsep for dendrogram and ColSideColors in heatmap.2
heatmap dge edger heatmap.2
written by fabian 1
0 votes
1 reply
888 views
Decision making on choosing the based on tblastn result
interpretation tblastn blast e-score
updated by GenoMax 16K • | written by srestha 0
4 votes
7 replies
3.9K views
How to Identify the pathogenicity of a set of variants (by using ACMG guidelines)?
pathogenicity snp variants
updated by Damianos P. Melidis 6 • | written by DanielC 21
0 votes
4 replies
1.6K views
Why am I getting the exact same MarkDuplicates results when passing a query or coordinate sorted bam?
picard bwa
updated by GenoMax 16K • | written by curious 90
0 votes
2 replies
765 views
use AverageExpression to stratify samples
scrna
written by ndra1456 0
0 votes
0 replies
1.4K views
Multiple taxonomy hits per OTU ID in VSEARCH despite --top_hits_only (90% ID after QIIME2 clustering at 97%)
vsearch
updated by GenoMax 16K • | written by salma.sarker 0
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