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2 votes
5 replies
1.6K views
Assemblers for short read bacterial isolates data
data isolates assembly shotgun
updated by Mensur Dlakic Mensur Dlakic • written by shevch2009 • shevch2009
0 votes
2 replies
1.1K views
Biopython get_terminals() doesn't get all terminals
biopython tree get_terminals gtdb
written by khp35 • khp35
0 votes
0 replies
976 views
Covariate Selection for DESeq2/ANCOM-BC: Alpha vs. Beta Diversity Findings
ancom-bc microbiome covariates deseq2 permanova
written by bioinfo bioinfo
0 votes
1 reply
1.8K views
NF core rna-seq pipeline
nf-core nextflow pipeline rnaseq
updated by GenoMax GenoMax • written by rajdeepboral00 • rajdeepboral00
0 votes
0 replies
808 views
Need Access to RadGraph2 Dataset from PhysioNet — Stuck at CITI Course Step
dataset
written by z.mohammadi64 • z.mohammadi64
3 votes
3 replies
1.7K views
Both up- and down-regulated gene sets return the same GO pathway analysis results?
deseq2 go-analysis
written by xqyn • xqyn
0 votes
1 reply
968 views
Discrepancies calculatin average coverage with Bedtools and Mosdepth
mosdepth human bedtools libraries illumina
updated by Pierre Lindenbaum Pierre Lindenbaum • written by María José • María José
0 votes
7 replies
5.0K views
Michigan imputation server error
topmed vcf
updated by Joel Wallenius Joel Wallenius • written by AR • AR
0 votes
8 replies
1.8K views
Proposal on CNV (Copies Variants Numer) analysis tools
number_variant somatic_data help copy
written by AIMAR • AIMAR
0 votes
2 replies
1.3K views
Error with bigWigAverageOverBed
usc human libraries illumina bigwigaverageoverbed
updated by Pierre Lindenbaum Pierre Lindenbaum • written by María José • María José
3 votes
13 replies
2.3K views
de novo chromosome level assembly
genome assembly chromsome
updated by colindaven colindaven • written by mthm • mthm
4 votes
2 replies
1.1K views
How is PLINK obtaining p-values and coefficients for linear regression
plink gwas
updated by GenoMax GenoMax • written by sakura • sakura
0 votes
4 replies
1.2K views
bcftools not filtering snps
bcftools
written by Bushra Bibi Bushra Bibi
2 votes
2 replies
1.0K views
There are a way to align phage reads in to bacterial genomes?
alignment sequences reads
updated by GenoMax GenoMax • written by schlogl schlogl
0 votes
5 replies
1.7K views
No index in the undetermined fastq file
bcl2fastq
written by 1769mkc 1769mkc
0 votes
0 replies
786 views
News: A Practical Introduction to R with the Tidyverse - Online 2–4 June
tidyverse r dataanalysis quarto ggplot2
written by Physalia-courses Physalia-courses
3 votes
3 replies
1.1K views
TCGA Germline allelic fraction distribution
calling variant tcga
written by ramiro.barrantes • ramiro.barrantes
3 votes
4 replies
1.6K views
Issue in circular heatmap, the rows value are getting interchanged.
r circos heatmap circularheatmap
written by Yukta • Yukta
1 vote
5 replies
2.3K views
How to preserve full FASTQ header through alignment and CRAM recovery
bam fastq cram
updated by GenoMax GenoMax • written by curious curious
0 votes
3 replies
1.2K views
error in the output of bedops
human bedtools libraries illumina bedops
updated by GenoMax GenoMax • written by María José • María José
0 votes
0 replies
242 views
Job: Bioinformatician - SAGC at SAHMRI Adelaide, South Australia
bioinformatician
written by Careers@SAHMRI • Careers@SAHMRI
0 votes
0 replies
1.5K views
Job: Bioinformatician - SAGC at SAHMRI Adelaide, South Australia
bioinformatician
written by Careers@SAHMRI • Careers@SAHMRI
15 votes
10 replies
67K views
ClusterProfiler : What is GeneRatio and BgRatio?
clusterprofiler
updated by chong.weelic • chong.weelic • written by ZheFrench ZheFrench
0 votes
2 replies
1.6K views
GSEA and Cytoscape Enrichment maps
cytoscape rna-seq gsea
updated by GenoMax GenoMax • written by kdca • kdca
0 votes
2 replies
1.1K views
CNVs annotation after CNVkit and clinical databases
annotation cnvs clinical_database
written by AIMAR • AIMAR
4 votes
0 replies
26K views
Herald: The Biostar Herald for Thursday, May 22, 2025
herald
written by Biostar Biostar
0 votes
2 replies
1.1K views
Correcting Technical Artifacts in Cross-Dataset Pseudobulk Analysis
batcheffect deseq2 pseudobulk
written by seojin.yang • seojin.yang
0 votes
1 reply
1.1K views
ADMIXTURE Freezes Right Before Completion
admixture admixture
updated by pereyra.s • pereyra.s • written by maxlaubstein • maxlaubstein
0 votes
3 replies
1.5K views
Remapping assembled contigs from Flye output file
assembly remapping flye
updated by Ram Ram • written by synthiiihuh • synthiiihuh
0 votes
1 reply
1.9K views
Where to find hg38 panel-of-normals and germline VCFs without 'chr' prefix?
pon hg38 vcf mutect2 gatk
updated by Pierre Lindenbaum Pierre Lindenbaum • written by dpgpfkdkeldi • dpgpfkdkeldi
0 votes
0 replies
624 views
Contigs Input For Phylogenetic Tree
contigs phylogeny nextstrain phylogenetics
written by davidmaimoun • davidmaimoun
0 votes
3 replies
1.2K views
assembly tool for plant data
plant
written by Bushra Bibi Bushra Bibi
0 votes
0 replies
1.0K views
Will using different Illumina manifest files (with only chr/position changes) affect genotype calling in GSA microarrays?
illumina manifest microarray gsa
written by windyday • windyday
0 votes
3 replies
1.2K views
tteximeta problem: couldn't find matching transcriptome, returning non-ranged SummarizedExperiment
teximeta salmon
updated by marco.barr • marco.barr • written by tarek.mohamed tarek.mohamed
0 votes
3 replies
1.6K views
Heatmap of rnaseq data with z-score scale
rna-seq
updated by swbarnes2 swbarnes2 • written by giovanna • giovanna
0 votes
2 replies
1.4K views
Z-score for scRNA-seq data?
scrnaseq
written by S • S
0 votes
0 replies
682 views
OncodriveFML warnings
cancer_driver selection_analysis driver_genes oncodrivefml
written by yahn • yahn
0 votes
2 replies
1.2K views
European Variation Archive submission eva-sub-cli validation failure: "Sample name concordance check"
eva-sub-cli europeanvariationarchive submission database
updated by Timothee • Timothee • written by askhat • askhat
0 votes
0 replies
1.7K views
Job: Project Research Scientist-I (Bioinformatics – Next Generation Sequencing Data Analysis) - India
biology computational bioinformatics
updated by Arup Ghosh Arup Ghosh • written by Rajunaik Vankudavath • Rajunaik Vankudavath
0 votes
0 replies
798 views
News: AI for Genomics: from CNNs and LSTMs to TRANSFORMERS Course - (Online, 9-11 Sept)
transformers cnn genomics lstms ai
written by Physalia-courses Physalia-courses
0 votes
1 reply
1.8K views
Anyone familiar with studies on computational neuroscience focused on consciousness, particularly in anatomical areas such as ARAS?
neuroscience computational
updated by Bastien Hervé Bastien Hervé • written by Dun • Dun
0 votes
1 reply
870 views
Evaluating Large CRISPR/Cas9 Deletions (~300 kb) in F0 Xenopus Embryos
crispr large mosaic cas12a f0 deletion
updated by GenoMax GenoMax • written by Santex • Santex
0 votes
15 replies
3.6K views
Trim CDS to ORF
codon cds offset transcripts
updated by colindaven colindaven • written by jaredbernard • jaredbernard
0 votes
3 replies
1.2K views
Multi-omic trajectory on CITE-Seq data
multiomic 10x single-cell transcriptomics trajectory
updated by ATpoint ATpoint • written by firestar firestar
0 votes
23 replies
5.5K views
STAR aligner problem on local laptop
rna-sequencing
updated by Sylpaper • Sylpaper • written by Morris_Chair Morris_Chair
0 votes
8 replies
3.3K views
Mageck RRA is listing negative controls as high fold change in the gene summary
python crispr mageck
updated by jared.andrews07 jared.andrews07 • written by liz.b • liz.b
0 votes
1 reply
828 views
RNA-seq analysis
star hisat2 featurecounts
updated by rfran010 • rfran010 • written by sk_24 • sk_24
0 votes
2 replies
1.4K views
Obtaining Q30/Q60 Values from Fastq Files
phred quality illumina rna-seq
updated by GenoMax GenoMax • written by joe_genome • joe_genome
0 votes
1 reply
1.0K views
Phylogeny aware alignment input
hoseq msa
updated by zjq6666666 • zjq6666666 • written by Meto • Meto
0 votes
5 replies
1.7K views
The allele with index 2 is not defined in the REF/ALT columns" error after AF filtering with gnomAD Exome
gnomad bcftools vcf
written by erikatatianacs • erikatatianacs
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