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0 votes
1 reply
805 views
Clarification of options --keep-dup: all vs. -f FRAG in MACS3
human libraries illumina callpeak macs3
updated by ATpoint 9.1K • | written by María José 1
3 votes
4 replies
1.4K views
Should I perform integration to correct batch effects?
batch effect
updated by antonioggsousa 344 • | written by han 3
0 votes
1 reply
718 views
Batch correction in TNBC epithelial cells
tnbc seurat epithelialcells scrnaseq batcheffect
updated by ATpoint 9.1K • | written by TNF_alpha 0
1 vote
5 replies
2.3K views
Best way to install R packages on an HPC?
r hpc
updated by Charles Plessy 293 • | written by ChumBucket2024 1
2 votes
2 replies
872 views
how to use filter_vep to filter vcf file
vcf filter
written by htchd 2
0 votes
2 replies
965 views
How to interpret genomescope to help remove duplicates
assembly hifi genomescope
written by mohamadelian1996 0
0 votes
2 replies
736 views
Is it valid to stack brightfield and fluorescence channels in a CNN input?
fluorescent-microscopy imaging microscopy
updated by LChart 518 • | written by Antonio 0
0 votes
0 replies
426 views
FusionCatcher cases where gene1 and gene 2 have 2 matches
fusions fusioncatcher
written by ieie 2
0 votes
2 replies
822 views
mgl tool index error
docking molecular error
written by Mahesh 0
0 votes
3 replies
1.2K views
convert raw counts to TPM
r
updated by dthorbur 350 • | written by pinheirofabiano 14
0 votes
7 replies
2.8K views
Creating kraken2 custom database
kraken2
updated by GenoMax 16K • | written by ramiro.barrantes 6
0 votes
0 replies
581 views
How to determine the coordinate of the transposon insertion on the reverse reading?
tn-seq transposon blastn
written by Елизавета 0
0 votes
8 replies
2.0K views
Single-cell RNA Sequencing - transcript abundance estimation using Alevin-Fry
alevin-fry single-cell sequencing salmon rna
updated by GenoMax 16K • | written by wooh 0
0 votes
0 replies
803 views
News: Conservation Genomics course
populationgenomics ne conservationgenomics
written by Physalia-courses 281
0 votes
3 replies
950 views
Snakemake Module Error: string indices must be integers
gatk snakemake
updated by Jesse 94 • | written by andean 0
0 votes
3 replies
873 views
How do I generate a Manhattan plot like this?
data-visualization manhattan-plot
written by mert 4
0 votes
2 replies
1.0K views
ATAC seq: from peaks to differential analysis ??
macs2 deseq2 atacseq
updated by rfran010 174 • | written by Picasa 71
0 votes
1 reply
703 views
Where to find expected copy number for a gene
genomics
updated by GenoMax 16K • | written by LayneSadler 10
0 votes
4 replies
2.0K views
Cut&Run replicates handling
peakcaller replicates seacr chipseq
updated by schowdhury8950 0 • | written by g.anande 0
0 votes
1 reply
1.1K views
Unable to extract count matrices from multi-layered Seurat object
seurat
written by bgbs 0
3 votes
12 replies
2.8K views
Learning Nextflow
genomic pipeline_analysis nextflow
written by AIMAR 7
1 vote
1 reply
807 views
open target platform SNP to Gene qurey
snptogene gwas snp
updated by GenoMax 16K • | written by SeoG 1
0 votes
1 reply
885 views
usage of ChromHMM and Segway
chromhmm segway
updated by Pierre Lindenbaum 17K • | written by qian 0
1 vote
6 replies
2.8K views
Which tools do you recommend me use to get the maximum information of a protein?
protein software
updated by fileyfood 2 • | written by Hamtaro 6
3 votes
4 replies
2.5K views
Tools for predicting protein function?
protein
updated by fileyfood 2 • | written by jamie.pike 9
3 votes
12 replies
4.8K views
Map genome positions onto protein coordinates?
pdb protein variant
updated by fileyfood 2 • | written by cmdcolin 448
3 votes
3 replies
2.1K views
Online tool for creating figures of gene with its features
features genes figures
updated by fileyfood 2 • | written by andre.arrudalima 8
1 vote
7 replies
2.4K views
Simple tools for creation of figures of gene and protein structure
gene protein
updated by Krish 0 • | written by andre.arrudalima 8
2 votes
3 replies
1.9K views
To create amino acid substitution in protein structure
protein software
updated by fileyfood 2 • | written by shwetamgr1 2
6 votes
13 replies
14K views
Where Can I Get The Secondary Structure Of A Protein?
protein structure sequence
updated by Krish 0 • | written by Giovanni M Dall'Olio 2.8K
3 votes
2 replies
2.7K views
Database Of Structurally Derived Protein Features
uniprot database
updated by fileyfood 2 • | written by samesense 5
2 votes
3 replies
2.3K views
Protein structure and snps
gene snp
updated by fileyfood 2 • | written by H.Hasani 101
16 votes
7 replies
12K views
Modelling Effect Of Mutation On Protein Structure
protein protein mutation
updated by fileyfood 2 • | written by didymos 22
1 vote
2 replies
1.5K views
Comparison of protein structures
protein
updated by fileyfood 2 • | written by lochanamp 8
1 vote
3 replies
4.9K views
Tools to display mutations in a protein's structure
protein sequence
updated by fileyfood 2 • | written by sviatoslav.kendall 99
2 votes
12 replies
2.0K views
Different comparisons in RNASeq Analysis
degs rnaseq
updated by mbyvcm 48 • | written by SomeOne 33
0 votes
1 reply
800 views
Querying on non-canonical bacterial IDs
microbes protein accession
updated by Mensur Dlakic 3.0K • | written by benjamin.kellman 0
0 votes
5 replies
1.2K views
Distribution of assayed SNPs per sample
distribution plink missingness
updated by mbyvcm 48 • | written by am29 6
0 votes
0 replies
846 views
News: Learn Python for Biological Data Analysis – Online Course this September!
ngs python programming
written by Physalia-courses 281
4 votes
0 replies
1.2K views
Tutorial: How to calculate partial correlation controlling cancer types
crispr biology correlation computational bioinformatics
written by Ming Tommy Tang 469
0 votes
1 reply
812 views
SAIGE-GENE error
r saige
updated by GenoMax 16K • | written by smyiz 3
0 votes
1 reply
1.9K views
IGV track display problem: interval rectangle from BED file appears above all tracks in white, overlapping each other
igv bed
written by mcsimenc 3
0 votes
2 replies
837 views
Y-axis break in Volcano Plot
volcano_plot enhanced_volcano
updated by antonioggsousa 344 • | written by rajdeepboral00 7
1 vote
1 reply
911 views
How to rank a gene list using correlation coefficient and p-values for GSEA/clusterProfiler?
clusterprofiler gsea correlation rank genelist
written by c-wes 1
0 votes
4 replies
1.5K views
Nanopore data analysis
nanopore
updated by colindaven 844 • | written by sarahmanderni 13
2 votes
2 replies
3.0K views
What is the difference between norm --multiallelics -any versus --atomize?
bcftools
updated by ashotmarg2004 13 • | written by a615ebfb 8
0 votes
1 reply
729 views
checking the sequences that share origin
sequencing
updated by GenoMax 16K • | written by QX 9
0 votes
0 replies
1.2K views
News: Assembling Genomes with Oxford Nanopore: A Hands-On Guide to Long-Read Sequencing
nanopore genomeassembly longreads
written by Physalia-courses 281
0 votes
2 replies
857 views
Bambu on illumina short reads sequencing
bambu
updated by Rob 747 • | written by Simone 0
0 votes
0 replies
529 views
Isoquant Major Exon Elongation
isoquant nanopore exon
written by aico 0
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