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0 votes
0 replies
4.9K views
News: Last 2 Seats – Genome Assembly with Oxford Nanopore (29 Sept–3 Oct)
genomeassembly nanopore longreads
written by Physalia-courses Physalia-courses
4 votes
9 replies
21K views
WGCNA package in R: dendogram plot error
wgcna r
updated by RJ • RJ • written by zyr123 • zyr123
0 votes
3 replies
9.8K views
Different UMAP for batch correction in R and Pytho
harmony umap
written by MS • MS
0 votes
1 reply
7.3K views
How to properly assemble phage genomes?
metagenomics assembly genome virus phage
updated by Joe Joe • written by marongiu.luigi marongiu.luigi
0 votes
4 replies
7.1K views
Forum: Developing a genomics ML model using bytes?
learning machine genomics bytes
updated by dariober dariober • written by Pranava • Pranava
1 vote
0 replies
5.8K views
News: Live Online course: Bioinformatic tools for transcriptomic data, Oct 2025
transcriptomics rnaseq
written by soledad.esteban • soledad.esteban
2 votes
5 replies
11K views
Forum: Tried building a compact sequence format with 4-bit storage
fasta open-source file-formats data-storage bioinformatics
updated by Alex Reynolds Alex Reynolds • written by Pranava • Pranava
0 votes
1 reply
8.1K views
Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio)
ontology gene
updated by GenoMax GenoMax • written by Naveen • Naveen
0 votes
5 replies
11K views
STARlong for pacbio Isoseq reads
starlong star pacbio isoseq
updated by YuZJ • YuZJ • written by Buffo Buffo
0 votes
0 replies
6.8K views
News: online course: R/Bioconductor for Mass Spectrometry and Proteomics
r massspectrometry proteomics bioconductor
written by Physalia-courses Physalia-courses
0 votes
2 replies
9.5K views
Transfer harmony-integrated scRNA-seq data to scanpy
scrna-seq harmony
updated by MS • MS • written by fifty_fifty • fifty_fifty
0 votes
0 replies
7.1K views
News: Live Online course: Bioinformatic tools for transcriptomic data, Oct 2025
transcriptomic analyses
updated by GenoMax GenoMax • written by soledad.esteban • soledad.esteban
0 votes
1 reply
7.4K views
Pipeline for downloading, aligning, and curating influenza A and B sequences for primer design
influenza workflow
updated by GenoMax GenoMax • written by Mariano • Mariano
0 votes
1 reply
7.4K views
GTEx sQTL v8 – annotation version used?
qtl gencode sqtl gtex
updated by GenoMax GenoMax • written by pedro.silvestre • pedro.silvestre
0 votes
2 replies
7.8K views
TCGA -derived Large RangeSummarizeExperient file
analysis data tcga
updated by ATpoint ATpoint • written by Ben • Ben
0 votes
7 replies
12K views
Yeast reference-based genome assembly
reference nanopore yeast genome assembly
updated by colindaven colindaven • written by amy967107 • amy967107
0 votes
8 replies
10K views
magpurify errors
magpurify data shotgun
updated by GenoMax GenoMax • written by shevch2009 • shevch2009
0 votes
0 replies
6.2K views
News: online course: Population Genomics using aDNA Data
paleogenomics adna populationgenomics
written by Physalia-courses Physalia-courses
0 votes
2 replies
8.9K views
Structural Variant identification on pangenome graphs
sv variant structural graph genome
written by Panos Panos
3 votes
17 replies
42K views
Conversion of Gene Name to Ensembl ID
gene rna-seq r genome
updated by Thanujay S • Thanujay S • written by bazok • bazok
0 votes
4 replies
9.3K views
Is this PCA plot correct??
pca
updated by GenoMax GenoMax • written by m00nphany • m00nphany
0 votes
2 replies
6.8K views
Forum: Splice junctions plots for long-read seq data
splice-junctions alternative-splicing long-read-sequencing
written by alison.ludzki • alison.ludzki
0 votes
0 replies
5.8K views
News: Introduction to Nextflow course - online, 10–12 November
pipeline ngsdata nextflow reproducibility workflow-manager
written by Physalia-courses Physalia-courses
4 votes
22 replies
38K views
Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
ensembl ucsc genome mapping coordinates
updated by Thanujay S • Thanujay S • written by Ryan D Ryan D
0 votes
4 replies
7.7K views
How to debug faulty BBmap clumpify command?
bbmap fastq trimming genome
written by marongiu.luigi marongiu.luigi
0 votes
2 replies
7.2K views
Fastq reads to csv - How can I make a csv with the read number of several fastq files in the same folder?
illumina csv read fastq count
updated by GenoMax GenoMax • written by alx.alo • alx.alo
1 vote
3 replies
6.9K views
Mapping amplicon to a reference sequence with iteration / elongation
barcoding ngs mapping
updated by mmahe • mmahe • written by marion.couedel • marion.couedel
0 votes
1 reply
6.2K views
MERLIN haplotyping
merlin
updated by Prashant • Prashant • written by smb2174 • smb2174
0 votes
1 reply
7.3K views
dbSNP VCF file compatible with GRch38.p14
vcf samtools
updated by GenoMax GenoMax • written by Kelly • Kelly
0 votes
0 replies
6.1K views
News: Single-Cell RNA-Seq Analysis
rna-seq single cell
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
0 replies
5.6K views
News: Introduction to Snakemake
snakemake
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
0 replies
5.5K views
News: course - Introduction to Deep Learning for Biologists -Online, 3–7 November
machinelearning python convolutionalneuralnetwork deeplearning
written by Physalia-courses Physalia-courses
1 vote
6 replies
12K views
Is total miRNA in EV constant? Implications for library size normalization.
rna-seq
updated by Gordon Smyth Gordon Smyth • written by Thomas.H.Hampton • Thomas.H.Hampton
1 vote
0 replies
5.2K views
Tool: evorca: fast and minimal plmDCA in JAX
jax python protein-contact-prediction bioinformatics plmdca
written by Shosuke • Shosuke
0 votes
9 replies
8.6K views
How to load sam.gz files on IGV?
visualization genome igv mapping
updated by GenoMax GenoMax • written by marongiu.luigi marongiu.luigi
0 votes
3 replies
7.0K views
Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
baserecalibrator mouse gatk
updated by iamsmor • iamsmor • written by 乙 乙
0 votes
2 replies
7.4K views
50K genomes to gene alignment
genomics pirate roary
updated by michael.ante michael.ante • written by Madde • Madde
0 votes
1 reply
7.6K views
Seurat - Warning after rescaling a subset of the data
findvaraiblefeatures r seurat
updated by Bastien Hervé Bastien Hervé • written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
1 reply
7.0K views
DotPlot / VlnPlot Seurat
scrna-seq significance-testing test seurat
updated by Bastien Hervé Bastien Hervé • written by npont • npont
0 votes
4 replies
7.3K views
Forum: Is there a need for a new Protein/Molecule viewer library?
protein viewer
written by Elbbard • Elbbard
0 votes
11 replies
14K views
Regarding the usage of raw vs filtered bc matrices
10x ranger cell snrnaseq
updated by dsull dsull • written by biotrekker • biotrekker
0 votes
5 replies
7.9K views
Tutorial: Parallel AUGUSTUS Execution via GNU Parallel
augustus genome ngs parallel
updated by Meiers • Meiers • written by Vijith • Vijith
0 votes
0 replies
5.7K views
News: Assembling Genomes with Oxford Nanopore – A Hands-On Guide (Online course, 29 September – 3 October)
genomeassembly nanopore longreads
written by Physalia-courses Physalia-courses
1 vote
3 replies
7.4K views
Calculation variant frequencies for copy number events for a cohort
cnv vcf variant frequency
written by barslmn • barslmn
1 vote
2 replies
8.6K views
Custom Selection of GO Terms or Pathways in EnrichR Output
enrichr ggplot2 r python rna-seq
written by mohammedtoufiq91 mohammedtoufiq91
2 votes
3 replies
7.0K views
Seurat not creating nCount_RNA and nFeature_RNA
seurat rstudio
updated by bczvx1004 • bczvx1004 • written by Nicholas • Nicholas
0 votes
1 reply
5.8K views
Cibersortx server down?
cibersortx
updated by GenoMax GenoMax • written by Sam • Sam
0 votes
1 reply
6.0K views
Available signature matrix for deconvoluting my bulk data using CIBERSORTX
bulk seq snrna deconvolution cibersortx
updated by Sam • Sam • written by rajdeepboral00 • rajdeepboral00
0 votes
6 replies
8.5K views
[vg giraffe] Unable to add read group to BAM file
vg
updated by anovak anovak • written by saruman • saruman
0 votes
11 replies
11K views
CIBERSORTx error: 'x' must be an array of at least two dimensions
signature cibersortx matrix
updated by ATpoint ATpoint • written by Jie • Jie
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