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1 vote
3 replies
1.3K views
Low busco scores after annotating genome using same model as another species in genus
braker genome annotation braker3
written by Wilber0x 7
0 votes
2 replies
961 views
GurobiError in COMPASS: "Element 47 of a double array is Nan or Inf" despite clean input data
compass scrnaseq metabolism gurobi
written by Binghong 4
0 votes
6 replies
1.6K views
Read group addition order in RNA-seq short variant discovery (SNPs + Indels)
rnaseq variantcalling addreadgroups gatk
updated by GenoMax 16K • | written by iamsmor 0
0 votes
5 replies
4.2K views
FastQC contaminant line error
fastqc contaminant error
updated by Kevin Blighe 9.0K • | written by jmah 3
0 votes
0 replies
757 views
News: Genomic Data Visualisation with R (online course)
r genomics datavisualisation
written by Physalia-courses 281
0 votes
5 replies
3.0K views
Issue with Downloading Genomes from BVBRC
bvbrc genomes
updated by GenoMax 16K • | written by ryanmaroun3 0
0 votes
0 replies
593 views
News: Learn how to make Single Cell Data Analysis easy- Upcoming Webinars
spatialtranscriptomics singlecell dataanalysis pathwayanalysis
written by Nicole 12
0 votes
3 replies
1.0K views
Gene or Exon Counts for DESeq2 in rRNA-Depleted RNA-seq?
rrna depletion gene exon
updated by GenoMax 16K • | written by n@4j 0
1 vote
7 replies
2.2K views
Falsely high busco score after genome annotation with braker
braker genomeannotation genome annotation braker3
updated by GenoMax 16K • | written by Wilber0x 7
2 votes
0 replies
1.1K views
Forum: Recursive reasoning for variant pathogenicity: early results show promise, need domain expertise to push further
variant-calling deep-learning clinvar pathogenicity-prediction machine-learning
written by Pranava 3
0 votes
5 replies
1.7K views
Clustering with other data type than scRNA-seq using Seurat
countmatrix scrna-seq methylation seurat
updated by Mensur Dlakic 3.0K • | written by npont 3
0 votes
1 reply
892 views
Is it reasonable to keep only protein-coding genes in highly variable features in scRNA-seq data?
scrna-seq
updated by ATpoint 9.1K • | written by carolofharvest 6
0 votes
2 replies
1.2K views
Some doubts about GWAS data and MR
mr gwas
updated by Corentin 66 • | written by kanttt16 0
0 votes
1 reply
867 views
Bedmethyl to vcf
vcf bedmethyl
updated by oneillkza 11 • | written by Romualdo 0
4 votes
0 replies
1.1K views
Herald: The Biostar Herald for Thursday, October 23, 2025
herald
written by Biostar 380
0 votes
1 reply
994 views
Repetitive regions annotation
repeatmodeler repeatmasker
updated by samuel.a.odonnell 86 • | written by frarodmar17 4
0 votes
4 replies
1.7K views
Choosing enrichment analysis tool
david metascape enrichr
written by Marlene 0
2 votes
10 replies
2.6K views
Making more complex design in limma removes significant genes
limma
updated by Gordon Smyth 916 • | written by marek.gierlinski 5
0 votes
0 replies
874 views
News: Genome Assembly Using PacBio and Hi-C course - online, 10–14 November
pacbio hifi longreads genomeassembly hic
written by Physalia-courses 281
0 votes
4 replies
1.5K views
scRNAseq analysis with a few samples (n=2 per group)
deg analysis scrna-seq samples
updated by ATpoint 9.1K • | written by Song 1
0 votes
4 replies
1.4K views
Redundant Genes in scRNA-seq Subclusters
immunology single cell
written by s 0
0 votes
4 replies
1.4K views
gfortran for phyloseq in R
ade4 rcpparmadillo gfortran phyloseq
updated by colindaven 844 • | written by mewgia 0
0 votes
0 replies
742 views
Tool: Xpress-Bio: a lean, real-time Bioinformatics runtime with IGV.js & BLAST integration
web-socket visualization sequence genomics server-sent
written by Ibrahim Tanyalcin 120
0 votes
16 replies
6.9K views
bowtie (1) 0% alignment on paired-end RNAseq data
bowtie rna-seq alignment mirna
updated by ATpoint 9.1K • | written by gulamaltab 0
0 votes
3 replies
2.2K views
Constructing a bread wheat pangenome graph using PGGB: per-chromosome vs. whole-genome approach and integration of assemblies from different sequencing technologies ?
pangenome structural-variation bread-wheat pggb
updated by samuel.a.odonnell 86 • | written by Sony Nguyen 2
0 votes
0 replies
729 views
News: UConn Virtual Bioinformatics Workshops
training atac-seq workshop chip-seq genomics
written by bioadam 1
0 votes
0 replies
653 views
News: Bioinformatic Analysis of Transposable Elements - online course
transcriptomics genomeassembly manualcuration transposableelements
written by Physalia-courses 281
0 votes
7 replies
1.9K views
MOuse Testis Enhancer region
enhancer
updated by i.sudbery 2.3K • | written by Bioinformatics_16 0
0 votes
7 replies
2.2K views
reference-guided assembly tools for short read data?
genomics assembly
updated by Ram 4.5K • | written by Hani 0
0 votes
7 replies
1.5K views
Forum: A dentist trying to shift his career
how-to dentistry bioinformatics data science
updated by ATpoint 9.1K • | written by Abdelrahman 0
0 votes
4 replies
1.3K views
Limma t and F-tests: should the degrees of freedom correspond to all samples if only some treatments are used in contrast?
limma proteomics
updated by Gordon Smyth 916 • | written by Sarah 0
0 votes
6 replies
2.0K views
missing values for batch in RNA-seq data
rna-seq limma deseq batch-effect batch
written by donan 0
0 votes
1 reply
903 views
Ensembl API - Global Ortholog Alignments
alignment api ensembl orthologs
updated by GenoMax 16K • | written by Nikit 0
1 vote
4 replies
1.8K views
Diffbind or DESEQ2 Chipseq data
deseq2 diffbind chip-seq
updated by james.hawley 10 • | written by Irene 1
0 votes
2 replies
6.0K views
News: ::FINAL Call:: Only 3 seats left - NGS Epigenomics Data Analysis (November 3-5 in Munich) - BS-Seq, ChIP-Seq, ATAC-Seq, ...
chip-seq atac-seq bs-seq
written by ecSeq Bioinformatics 9
1 vote
4 replies
2.2K views
Forum: layoffs in biotech
layoff biotech
updated by dr_cfoster 125 • | written by Dara 1
1 vote
1 reply
1.7K views
Drug-Drug similarity database
drug drug_similarity ddi
updated by ardigen 0 • | written by carlos_marchi 9
0 votes
0 replies
680 views
News: Nanopore Direct RNA Sequencing (RNA004)
transcriptomics nanopore rnaseq
written by Physalia-courses 281
0 votes
2 replies
1.2K views
Reference VCF with "chr" contigs instead of "number"
vcf reference-genome
updated by Ram 4.5K • | written by GPR 40
0 votes
1 reply
1.0K views
DE analysis in nascent RNA Seq based on intron sequences
normalization deseq2 rna-seq nascent
updated by dsull 781 • | written by MolGeek 8
0 votes
4 replies
1.9K views
SNP calling ONT sequenced files
ont snps
updated by Момчил 1 • | written by blur 30
0 votes
0 replies
744 views
News: RAD-seq Data Analysis - online course
phylogenomics radseq genomics population stacks
written by Physalia-courses 281
0 votes
8 replies
3.2K views
Is there a way to produce/convert nhmmer output to a bed file?
bed nhmmer
updated by colindaven 844 • | written by jamie.pike 9
0 votes
1 reply
662 views
Unique insertion sites Calculation from Himar1 C9 based TnSeq
kossivi
updated by GenoMax 16K • | written by Kossivi 0
0 votes
5 replies
1.4K views
BWA-MEM with an array of files
alignment array bwa-mem
updated by LChart 518 • | written by garcesj 5
0 votes
0 replies
764 views
Job: Sr. Manager, Clinical Data Science at InterVenn Biosciences
statistics glycoproteomics proteomics machine-learning omics
written by Daniel 0
0 votes
1 reply
786 views
Modeling/simulations using SNPs data
snp
updated by Dave Carlson 223 • | written by Gonzalo 0
0 votes
1 reply
942 views
Strugling on the 3'rule of HGVS
notation hgvs variants
updated by Jeremy Leipzig 2.3K • | written by lacb 12
1 vote
17 replies
5.9K views
Extract fastq sequences based on date/time (which is in the header)
sequence fastq
updated by zhanxw 2 • | written by a.b.g 1
1 vote
5 replies
3.7K views
Filter nanopore fastq files by start time
nanopore fastq filter start time
updated by zhanxw 2 • | written by sendhelp 1
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