This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
3.3K views
meta data analysis for clustering
meta-analysis clustering functional genomics
updated by Meisam • Meisam • written by jiwpark00 jiwpark00
1 vote
9 replies
4.2K views
GTF file for HIV strain pNL4-3
hiv annotation mapping
updated by Ales • Ales • written by caggtaagtat caggtaagtat
0 votes
0 replies
669 views
Job: Postdoctoral Fellowship at the American Museum of Natural History's Richard Gilder Graduate School
postdoctoral fellowship
written by Info-rggs • Info-rggs
0 votes
0 replies
623 views
News: Autumn School in Bioinformatics - online, 20–24 October
ngs phylogenomics rnaseq singularity docker
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.8K views
Dorado in PowerShell on Windows
windows on powershell in dorado
updated by jared.andrews07 jared.andrews07 • written by sbissi102 • sbissi102
1 vote
4 replies
1.6K views
Which aligner is more suitable for ONT R10.4.1 Dorado-corrected reads: minimap2 or winnowmap?
winnowmap minimap2 r10.4.1 nanopore
written by tungsega • tungsega
0 votes
2 replies
916 views
Nextflow: How to format input tuple for STAR_ALIGN process with STAR index directory
nextflow
written by DdogBoss • DdogBoss
0 votes
4 replies
1.2K views
how to respond that my research does not have experimental validation
rebuttal
updated by Mensur Dlakic Mensur Dlakic • written by nuorain • nuorain
0 votes
7 replies
2.1K views
Quantification using salmon in alignment-based mode after minimap2 run
nanopore ont salmon
written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
1 reply
1.2K views
infercnv error at STEP 18 - file descriptor is too large for select()
r 10x singlecell infercnv
written by yura.grabovska • yura.grabovska
0 votes
0 replies
505 views
News: online course - Environmental Metagenomics
illumina metagenomics nanopore mags
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.2K views
How to convert gff to Sequin format with gff3-to-tbl?
genome annotation conversion sequin gff
updated by GenoMax GenoMax • written by marongiu.luigi marongiu.luigi
0 votes
10 replies
3.8K views
Collect COV file by BedCoverage
copynumbervariation clincnv ngs
updated by German.M.Demidov German.M.Demidov • written by Ishak • Ishak
0 votes
1 reply
604 views
gnomad par region variants
region variant par gnomad
updated by benformatics benformatics • written by a615ebfb • a615ebfb
0 votes
2 replies
857 views
Forum: Help with Ideathon
pgs prs brainstorming genomics bioinformatics
written by V K • V K
0 votes
2 replies
838 views
Gene expression equivalent of polygenic risk score ?
expression gene
written by Picasa Picasa
0 votes
1 reply
841 views
Help interpreting BLASTn results and phylogenetic tree for genetics practical
student
updated by GenoMax GenoMax • written by simonlydialm • simonlydialm
0 votes
0 replies
547 views
News: Introduction to CRISPR for Ecology and Evolution Studies (13–16 Oct, online)
genomeediting cas9 crispr evolution
written by Physalia-courses Physalia-courses
2 votes
1 reply
1.5K views
With 10x Visum HD : How to map the barcode id to the barcode sequence ?
10x barcode visium
written by sacha sacha
0 votes
0 replies
647 views
Job: Genetics for Biodiversity Conservation Korea - Ecuador
ecuador biodiversity korea
updated by colindaven colindaven • written by Pablo • Pablo
2 votes
0 replies
799 views
News: FastTrack Bioinformatics - Online Course in Bioinformatics
handbook biostar
written by Istvan Albert Istvan Albert
1 vote
1 reply
1.4K views
Dictys refuses to use CUDA supported pytorch during installation
python conda gpu
written by zwjiang • zwjiang
0 votes
0 replies
1.1K views
News: online course: Efficient Data Analysis with data.table in R - 8 October
r programming datatable
written by Physalia-courses Physalia-courses
0 votes
4 replies
2.8K views
pySCENIC aucell matrix is all 0s
cli scenic grn aucell
written by Tripfantasy • Tripfantasy
0 votes
1 reply
1.7K views
MAPQ algorithms of Giraffe
giraffe vg
updated by anovak anovak • written by gulin • gulin
1 vote
0 replies
1.2K views
Job: Bioinformatician, Senior Research Associate STS
omics jobs hiring bioinformatics
written by William • William
0 votes
1 reply
1.5K views
X chromosome male and female imputation
chrx gwas imputation
updated by barslmn • barslmn • written by SeoG • SeoG
0 votes
1 reply
1.9K views
conda create PackagesNotFoundError
conda
updated by dr_cfoster dr_cfoster • written by raquel • raquel
1 vote
0 replies
1.5K views
Job: Hiring FT Remote Nextflow engineer to build ML workflows for cancer genomics
nextflow jobs hiring engineer
written by L • L
0 votes
6 replies
6.8K views
Orthofinder Not Mapping to Any Orthogroups
orthology orthodb blast orthofinder
written by saamhasan55 • saamhasan55
0 votes
2 replies
2.6K views
LASSO parameter selection: lambda min vs lambda 1se
lasso
written by nuorain • nuorain
0 votes
0 replies
1.4K views
News: Online course: Introduction to Nanopore Direct RNA Sequencing (RNA004)
rna004 directrnaseq nanopore rnamodifications
written by Physalia-courses Physalia-courses
0 votes
2 replies
2.5K views
Feasibility of detecting PCR-chimeric reads with Machine Learing (ML) for organelle genome assemblies
ml assembly chimeric mitochondria
updated by andres.firrincieli andres.firrincieli • written by moreDanOne • moreDanOne
0 votes
2 replies
2.9K views
Help understanding this per base sequence content failure fastqc plot
fastqc
updated by lieven.sterck lieven.sterck • written by curious curious
0 votes
5 replies
5.4K views
Linear regression vs DESeq2 models for DEG analysis
bulk seq analysis rna
updated by ATpoint ATpoint • written by FioG • FioG
0 votes
2 replies
3.4K views
how to explain the sample size discrepancy in UCSC Xena
ucsc xena
written by nuorain • nuorain
1 vote
3 replies
6.4K views
What happened to biomart.org
biomart
updated by Jeremy Leipzig Jeremy Leipzig • written by 6bbfc7a8 • 6bbfc7a8
0 votes
6 replies
6.8K views
real time PCR data analysis
pcr donor effect
updated by Gordon Smyth Gordon Smyth • written by Fatemeh • Fatemeh
2 votes
4 replies
7.0K views
Forum: Looking to learn practical bioinformatics
learn practical collaborate
written by Upesh • Upesh
0 votes
0 replies
3.4K views
News: Workshop: Virtual ChIP-Seq / ATAC-Seq – Oct. 28–30, 2025
workshop atacseq chipseq virtual uconn
written by zsc25001 • zsc25001
0 votes
5 replies
7.2K views
Does this adapter content from fastqc to warrant trimming prior to alignment?
fastqc bwa-mem multiqc
written by curious curious
0 votes
5 replies
6.1K views
Restricting ncbi-genome-download (bacteria, viral, fungi, archaea, protozoa) to a specif host
ncbi
updated by GenoMax GenoMax • written by saruman • saruman
1 vote
12 replies
7.2K views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
starsolo scrna-seq star snrna-seq mgi
updated by Vittorio • Vittorio • written by atowns21 • atowns21
0 votes
2 replies
5.1K views
How to overcome OS return value: 4 with SPAdes
spades de novo genome assemble
written by marongiu.luigi marongiu.luigi
0 votes
2 replies
5.0K views
Understanding the relationship between hhr and a3m output of HHblits
hhblits hhsuite
updated by Joe Joe • written by Andrew • Andrew
0 votes
4 replies
5.9K views
Help with Model
model modelling
updated by i.sudbery i.sudbery • written by Stele • Stele
0 votes
0 replies
4.6K views
News: Last 3 seats: In-Person Single-Cell RNA-Seq Data Analysis Workshop (October 6-8 in Berlin)
scrnaseq singlecell transcriptomics
written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
2 replies
6.0K views
Methods to analyse structural similarity: co-evolution vs convergence
genomics comparative proteomics evolutionary
updated by Joe Joe • written by kelpotus22 • kelpotus22
0 votes
1 reply
5.0K views
vcf multisample
multi-sample genomic vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Donald • Donald
1 vote
9 replies
9.0K views
Genome Assembly QC from BAM files
qc assembly bam hifi
updated by GenoMax GenoMax • written by SomeOne • SomeOne
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