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0 votes
3 replies
1.0K views
intersect question of H3k4me3, H3k27Ac, H3k27me3, calculating the consensus
histonemarks peakcalling intersect
written by theodore 14
0 votes
1 reply
790 views
Ribo-seq analysis workflow
ribo seq single end
updated by Kevin Blighe 9.0K • | written by mansiparihar13 0
0 votes
9 replies
2.4K views
Inferring input data suitability (quality and quantity) from PCA for machine learning classification problem.
outliers datasets pca classification quality
written by Shakunthala Natarajan 2
0 votes
9 replies
2.0K views
GWAS Manhattan plot shows no SNPs near centromeres — is this result reliable?
rmvp snp gwas
written by straywilddog 0
0 votes
2 replies
897 views
How to add zinc for autodockZn
docking zinc autodockzn metalloprotein
written by Ria 0
0 votes
1 reply
660 views
News: Virtual Genome Annotation Workshop (Nov 18-20, UConn CBC)
genomics annotation workshop
updated by Kevin Blighe 9.0K • | written by bioadam 1
0 votes
0 replies
544 views
News: RNA-seq Data Analysis for Beginners course - online, 10-19 February 2026
ngs rnaseq
written by Physalia-courses 281
0 votes
4 replies
2.0K views
R code for getting miRNAs from miRTarBase and TargetScan by gene list
mirtarbase genelist rcode targetscan
updated by Kevin Blighe 9.0K • | written by mastoreh 0
0 votes
4 replies
1.7K views
Germline and somatic mutations TCGA (GDC Data Portal)
germline somatic tcga mutation
written by Charlotte Stubbe 0
0 votes
2 replies
1.4K views
NOVOPlasty assembly fails with “INVALID SEED” using first read as seed
mitochondria assembly genome novoplasty
updated by Kevin Blighe 9.0K • | written by Buddha 0
0 votes
1 reply
750 views
Phylogeny between monocot and eudicot
phylogeny
updated by Kevin Blighe 9.0K • | written by Mohammed 0
0 votes
1 reply
1.7K views
Seurat/Signac multiome analysis filtering on nCounts instead of nFeatures
10x signac seurat multiome
updated by Kevin Blighe 9.0K • | written by yura.grabovska 94
0 votes
1 reply
1.0K views
Understanding FEELnc Tool Results and lncRNA Functional Analysis
feelnc tool
updated by Kevin Blighe 9.0K • | written by Mian Numan 0
0 votes
3 replies
1.4K views
Reasonable number of SNPs in a bacterial genome.
snp bacteria
updated by Kevin Blighe 9.0K • | written by yesquokkan 1
1 vote
0 replies
616 views
News: In Memoriam: Atul J. Butte (1969-2025), Pioneer in Bioinformatics and Personalized Medicine
genetics atulbutte
written by Kevin Blighe 9.0K
0 votes
5 replies
1.5K views
vg dist on (large) graph runtime?
vg
updated by GenoMax 16K • | written by kingcohn 3
0 votes
3 replies
1.6K views
Haploview LD plot unespected results
haploview snps
updated by Kevin Blighe 9.0K • | written by chiuni2308 0
0 votes
3 replies
1.7K views
Cells from normal sample were incorrectly classified as tumor cells using copykat
copykat scrna-seq cell tumor
updated by Kevin Blighe 9.0K • | written by tujuchuanli 14
2 votes
0 replies
714 views
News: Biostars Newsletter [November 11, 2025]
newsletter
written by Kevin Blighe 9.0K
0 votes
7 replies
12K views
Would Anyone Share The Metabric Breast Cancer Data With Me Please?
metabric
updated by Ram 4.5K • | written by koukougogo 6
0 votes
2 replies
975 views
Structural variant database
variants cnv database structural
written by Ali 0
0 votes
2 replies
1.3K views
Configuration file for DSP WTA
dsp
updated by GenoMax 16K • | written by Petesview 1
0 votes
2 replies
1.7K views
Homology Directed Repair in Crispr-Cas9 gene editing/deletion
crispr editing cas9 gene
updated by Kevin Blighe 9.0K • | written by hiname 0
0 votes
1 reply
1.0K views
Choosing which transposable element annotation to use for analysis
transposable bulk_rna-seq element
updated by Kevin Blighe 9.0K • | written by rejflstrasni 0
1 vote
5 replies
2.0K views
Read spatial data from GSM8557976 using Seurat
spatial data seurat
updated by fracarb8 176 • | written by tujuchuanli 14
0 votes
3 replies
1.3K views
Data Mining for Chip_seq analysis
cancer chip_seq prostate
updated by Kevin Blighe 9.0K • | written by tabasumughal 0
0 votes
7 replies
3.3K views
Why do I observe a large number of “Unassigned_NoFeatures” reads in featureCounts after standard mouse RNA-seq workflow?
rna-seq seq ngs rna
updated by Kevin Blighe 9.0K • | written by 城玮 0
0 votes
2 replies
1.5K views
How to use "simulated playback" feature in MinKNOW
ont nanopore sequencing selective
updated by Kevin Blighe 9.0K • | written by matt_arnold_bio 0
0 votes
6 replies
3.1K views
Calculating pi and phi from VCF files on R
snp vcf r phi pi
updated by Michael Dondrup 5.6K • | written by maho4822 0
0 votes
5 replies
2.0K views
I cannot install anaconda on ubuntu 22.04
ubuntu anaconda conda
updated by Kevin Blighe 9.0K • | written by Omar 1
0 votes
16 replies
4.3K views
Single Cell RNA Seq
sctransform harmony scrnaseq seurat
updated by Kevin Blighe 9.0K • | written by scRNA2023 0
0 votes
2 replies
1.2K views
Pisces doesn't like high-quality reads when there is a soft-clip affecting the full read.
pisces
updated by Kevin Blighe 9.0K • | written by ManuelDB 11
0 votes
6 replies
3.0K views
Log2 transformation is well used, but is there a good paper that can be used as reference ?
tpm log2-transformation r
updated by Kevin Blighe 9.0K • | written by AlexStar 22
0 votes
8 replies
6.2K views
Adjust width of annotations in pheatmap
r heatmap
updated by Kevin Blighe 9.0K • | written by divya.nandakumar 3
0 votes
6 replies
1.9K views
How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
r peak chip-seq
updated by Kevin Blighe 9.0K • | written by DareDevil 448
0 votes
3 replies
1.3K views
HDOCK Server Error!
hdock docking
updated by Kevin Blighe 9.0K • | written by Jannatul Ferdous 0
0 votes
3 replies
1.0K views
Feature selection for multi-class classification problem.
feature m3drop r python selection
updated by Kevin Blighe 9.0K • | written by Shakunthala Natarajan 2
0 votes
9 replies
2.5K views
Feature Counts - potential bug with outfile.jcounts
featurecounts
updated by Kevin Blighe 9.0K • | written by chrisk 0
0 votes
6 replies
2.3K views
How to remove duplicated SNPs based on MAF with Plink?
snps plink2 duplication maf
updated by Kevin Blighe 9.0K • | written by giulia.trauzzi 3
0 votes
2 replies
1.4K views
How to create modified basecalling dataset with nanopore data with an ambiguous motif sequence?
dorado nanopore remora
updated by Kevin Blighe 9.0K • | written by swim1128 0
0 votes
3 replies
1.7K views
How to visualize shared pathways between ORA (enrichment) results?
visualization ora pathways enrichment
updated by Kevin Blighe 9.0K • | written by Picasa 71
0 votes
19 replies
3.9K views
Interpretation of logFC in limma-voom contrasts
limma logfc limma-voom
written by donan 0
0 votes
2 replies
1.1K views
miRNA analysis
mirna vescicles extracellular
updated by Kevin Blighe 9.0K • | written by deniselavezzari 0
0 votes
3 replies
1.7K views
HLA alignment, approximation and frequencies
fastq
updated by Kevin Blighe 9.0K • | written by oumo 0
0 votes
2 replies
1.5K views
Confusion regarding Euclidean distance measures of dissimilarity
rnaseq r edger
updated by Kevin Blighe 9.0K • | written by mohsamir2016 3
0 votes
4 replies
6.7K views
Extract transcript fasta using gff
fasta gff
updated by Bourumir 4 • | written by boczniak767 89
0 votes
1 reply
936 views
MDS file NaN values
missing genome mds
updated by Kevin Blighe 9.0K • | written by am29 6
0 votes
2 replies
3.1K views
How to decide the normalization method for targeted metabolomics data ?
lc-ms normalization r metabolomics targeted-metabolomics
written by Luwell 0
0 votes
1 reply
3.6K views
Best Practice for Group Composition Plots in Phyloseq
phyloseq microbiome relative-abundance
updated by Kevin Blighe 9.0K • | written by bioinfo 6
0 votes
3 replies
1.8K views
Sea of genomic wide significant hits in GWAS (Plink2) and Absence when using regenie
genome-wide gwas snps regenie plink2
updated by Kevin Blighe 9.0K • | written by a.papadam 0
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