This is a test version of Biostars. For the public version, visit https://www.biostars.org.
mohsamir2016
mohsamir2016
Reputation:
30
Joined:
4.8 years ago
Last seen:
3.1 years ago
Location:
Egypt

No profile information

Latest posts by user
0 votes
1 reply
0 views
Comment: Comment: Error massage when running a GATK tool (selectvariants): no positional argument
written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: Error massage when running a GATK tool (selectvariants): no positional argument
written by mohsamir2016 • mohsamir2016
0 votes
5 replies
2.4K views
Error message when running a GATK SelectVariants: no positional argument is defined for this tool
gatk snps
updated by Ram Ram • written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: Getting sequences from fastq file using Grep command
written by mohsamir2016 • mohsamir2016
0 votes
0 replies
0 views
Comment: Comment: Getting sequences from fastq file using Grep command
written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: Getting sequences from fastq file using Grep command
written by mohsamir2016 • mohsamir2016
0 votes
11 replies
6.2K views
Getting sequences from fastq file using Grep command
linux
updated by swbarnes2 swbarnes2 • written by mohsamir2016 • mohsamir2016
0 votes
0 replies
618 views
Correction for among sample/chromosomes for sequenicng depth, when comparing between samples or animals
gatk snps
written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
updated by Ram Ram • written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
written by mohsamir2016 • mohsamir2016
0 votes
7 replies
1.9K views
How GATK pipeline called a homozygeous alternate allele (1/1) although one copy is supported by 0 reads ?
snp gatk
updated by Ram Ram • written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: Extracting information from VCF file for many specific positions in specific chr
written by mohsamir2016 • mohsamir2016
0 votes
3 replies
1.5K views
Extracting information from VCF file for many specific positions in specific chromosomes
snp rna gatk seq
updated by Pierre Lindenbaum Pierre Lindenbaum • written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: Concatenating fastq for the same sample or doing it separately and merge at the
written by mohsamir2016 • mohsamir2016
0 votes
8 replies
3.8K views
Concatenating fastq for the same sample or doing it separately and merge at the BAM stage ?
rna-seq
updated by Ram Ram • written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Comment: Comment: bcftools isec output for multiple vcf files interpretations
written by mohsamir2016 • mohsamir2016
0 votes
0 replies
676 views
Visualizing a mapped SNPs/INDELs on chromosomes of chicken
genomic
written by mohsamir2016 • mohsamir2016
0 votes
1 reply
6.9K views
Failed to install a package from Bioconductor and the library location not writable
bioconductor rna-seq r
updated by Ram Ram • written by mohsamir2016 • mohsamir2016
0 votes
1 reply
0 views
Answer: Answer: Does a merged VCF file (using bcftools merge) contain unique SNPs or INDELs fro
written by mohsamir2016 • mohsamir2016
0 votes
3 replies
2.5K views
Does a merged VCF file (using bcftools merge) contain unique SNPs or INDELs from all merged VCF files
vcf
updated by barslmn • barslmn • written by mohsamir2016 • mohsamir2016
Latest awards to user
TODO: Awards