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0 votes
4 replies
554 views
How to get, which genes are osscilatory in nature in Euglena gracilis.
circadian rhythm
updated by Dunois 301 • | written by ashishkumar30121999 0
0 votes
3 replies
662 views
What file types can I use for the comparison of proteomes?
patric proteome
updated by Ram 4.5K • | written by marongiu.luigi 79
0 votes
0 replies
189 views
Blog: Interval operations benchmark for Python libraries
operations python interval benchmark
written by Marek 10
0 votes
6 replies
4.5K views
Subset Seurat Object based on metadata
seurat
updated by Ram 4.5K • | written by Nona 9
0 votes
8 replies
42K views
How to get subset of a Seurat object based on metadata?
scrna-seq seurat
updated by JackShao 0 • | written by sunyeping 11
0 votes
0 replies
211 views
Differences between SNPs and Allele coverage for Prediction
variant genetics coverage calling
written by Loïc 0
0 votes
0 replies
293 views
tbtool export svg for gene structure (exon/intron)
gene tbtool structure
written by HajiNasrollah 0
0 votes
7 replies
888 views
scRNA datasets integration
scrnaseq integration batch_correction
written by mrashad 9
0 votes
0 replies
400 views
News: UC Davis Bioinformatics Core online workshops registration is now live for 2026!
workshop
written by najoshi 3
0 votes
1 reply
380 views
Manhattan plot of Fisher's Exact Test results
manhattanplot
updated by dthorbur 350 • | written by al 0
8 votes
4 replies
759 views
Blog: On the capabilities of modern AI coding models in developing genomics software
transcriptomics mapping algorithms ai
updated by Dunois 301 • | written by Rob 747
0 votes
0 replies
224 views
gff file for Circos TBTools
mcscanx tbtools circos gff
updated by Pierre Lindenbaum 17K • | written by catscampos 0
0 votes
4 replies
638 views
Does GATK output partial genotypes, where only one allele in a diploid individual is called
variantcalling genotyping gatk
written by Em 2
0 votes
0 replies
201 views
WGCNA Scale Independence Problem
wgcna
written by Siobhan 0
0 votes
1 reply
412 views
PASA- annotation comparison step
rna-seq pasa genomeassembly
updated by kalavattam 85 • | written by rachana 0
1 vote
0 replies
265 views
News: Course: Modern Statistical Thinking for Biologists (Bayesian perspective)
bayes course modelling biostatistics
written by Rosina Savisaar 2
1 vote
0 replies
189 views
Tool: SquiDBase: a community resource of raw nanopore data from microbes
metadata nanopore repository
written by Arup Ghosh 402
0 votes
3 replies
7.9K views
Removing specific cluster based on one gene down regulation
single-cell seurat scrna-seq
updated by germansalcedo542 0 • | written by nitin 0
1 vote
7 replies
13K views
How to download triple negative breast cancer RNA-seq fpkm data from GDC.
rna-seq sequencing
updated by Lucía 0 • | written by mtkk94 1
0 votes
2 replies
513 views
Extracting library information from fastq file to add read group with GATK
read library illumina group gatk
updated by GenoMax 16K • | written by Noctiluca 0
0 votes
2 replies
644 views
Ribo-seq: Should low-quality reads be filtered at FASTQ or BAM stage after fastp trimming?
qualitycontrol riboseq trimming
written by Sammy 1
0 votes
1 reply
706 views
SCTransform vs LogNormalize for preprocessing scRNA-seq data before cMonkey biclustering
single-cell seurat cmonkey
updated by Ram 4.5K • | written by arjunp22 0
0 votes
1 reply
348 views
News: Machine Learning for Bio-Imaging course - online, 10-12 March
machinelearning bio-imaging python deeplearning
written by Physalia-courses 281
0 votes
2 replies
447 views
Ultima wgs quality control
ultima wgs
updated by samuel.a.odonnell 86 • | written by SeoG 1
0 votes
0 replies
353 views
Estimating DUF1220 (Olduvai domain) copy numbers in Denisova 25 high-coverage genome (Peyrégne et al., 2025 bioRxiv)
ancient-dna duf1220 denisova 25
written by needininfo 0
0 votes
0 replies
245 views
Blog: Benchmarking Genomic Format Readers in Python with Polars
python polars
written by Marek 10
0 votes
10 replies
3.4K views
Bioinformatics students: Air or Pro?
laptop macbook
updated by Ram 4.5K • | written by rachana 0
0 votes
2 replies
455 views
polyA content in RNA-Seq samples
check rna-seq quality
updated by michael.ante 408 • | written by pinheirofabiano 14
0 votes
0 replies
243 views
News: Comparative Genomics course. - online, 23–27 February
genomeannotation snvs svs comparativegenomics
written by Physalia-courses 281
0 votes
0 replies
242 views
News: UConn CBC - Virtual RNA-seq Workshop (Feb 24-26th)
hpc workshop r rnaseq
written by bioadam 1
1 vote
0 replies
1.2K views
Python tools for gene annotation, ontology & gene set analysis
gene ontology annotation databases single-cell
updated by Ira 0 • | written by PianoEntropy 7
0 votes
0 replies
220 views
HIV LTR regions
hiv ngs
written by hajar 0
1 vote
6 replies
1.1K views
Genome assembly reference .fasta + Illumina reads
illumina assembly reference
written by A_heath 18
0 votes
1 reply
615 views
ML project ideas in bioinformatics to get started
machinelearning project cancer transcriptomics genomics
updated by Pierre Lindenbaum 17K • | written by rachana 0
0 votes
0 replies
227 views
Classifying TE-containing RNA-seq transcripts into TE-initiated, exonized, and terminated categories
genomeassembly genomeannotation transposons retrotransposons transposableelements
written by rachana 0
0 votes
2 replies
837 views
Best way to deal with contamination in RNA bulk seq data
rnaseq contamination bulkseq deseq2 decontamination
written by DM95 0
0 votes
0 replies
338 views
Job: Postdoctoral Associate - Bioinformatics Education - Baylor College of Medicine - Houston, Texas, USA
postdoc job r
written by Erik Wright 42
0 votes
3 replies
552 views
Forum: Journals for Bioinformatic and Metagenomic Studies?
bioinformatics learning machine journal
updated by ATpoint 9.1K • | written by egascon 6
0 votes
2 replies
1.4K views
How to remove gap-only columns from a multiple sequence alignment in FASTA with Jalview and how to edit genes? Also, how to extract genes without gaps from an alignment on Linux?
fasta alignment jalview
written by ivaldakoyo 0
0 votes
2 replies
553 views
Stereoseq workflow analysis
spatial transcriptomic
written by Synat 0
0 votes
9 replies
1.2K views
Fastq with more reads than fast5 files
nanopore ont fast5 fastq sequencing
written by Anna 0
0 votes
3 replies
522 views
Transposable Elements Community Hub
genome-assembly transposable-elements genome-annotation transposons retrotransposons
updated by Ram 4.5K • | written by rachana 0
1 vote
0 replies
433 views
Tool: Jowna: A pure web baed alternative to Krona for hierarchical data visualization
krona visualizer
written by Gianni 1
0 votes
1 reply
326 views
Condensing/Combining samples of same condition into one VCF
variant vcf vcftools calling
updated by Pierre Lindenbaum 17K • | written by Shay 0
0 votes
0 replies
200 views
Finding Conserved, High-Coverage Windows in Transposable Elements for RNAi
read shrna elements coverage transposable
written by manikin_python9f 2
0 votes
1 reply
362 views
Plot mutations and read coverage in bacterial genomes
plot mutations coverage sequencing r
updated by colindaven 844 • | written by Paul 0
0 votes
1 reply
334 views
Forum: Recent M.S. bioinformatics grad seeking hands-on experience and advice
genomics career transcriptomics internship rna-seq
updated by ATpoint 9.1K • | written by ravjolt 0
8 votes
16 replies
6.4K views
What Do You Use For Publication Alerts?
updated by Dimitris Grigoriadis 15 • | written by Lee Katz 316
0 votes
1 reply
463 views
Forum: Will anyone want to use a PyDESeq2-based platform? How to improve my platform
rna-seq pydeseq2 volcano plot
updated by Istvan Albert 10K • | written by Chuang, D-H 0
0 votes
1 reply
327 views
nf-core bioinformatics hackathon
bioinformaticshackathon hackathon nfcore
updated by Pierre Lindenbaum 17K • | written by rachana 0
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